Table 1.
Methods and outputs for sequencing experiments.
| Experiment | Method/Platform | Manufacturer | Insertion size | Output | Coverage |
|---|---|---|---|---|---|
| DNA extraction | Magnetic bead method | Invitrogen, Thermo Fisher Scientific, USA | NA | NA | NA |
| RNA extraction | TRIzol reagent | Thermo Fisher Scientific, USA | NA | NA | NA |
| Short-read seq | NovaSeq 6000; paired-end | Illumina, USA | 350 bp | 68.7 Gb | 115× |
| Long-read seq | PromethION | Oxford Nanopore Technologies, UK | N50 = 16.7 Kb | 117.6 Gb | 196× |
| Hi-C seq | NovaSeq 6000; paired-end; digested by MboI | Illumina, USA | 350 bp | 178.1 Gb | 297× |
| RNA seq | NovaSeq 6000; paired-end | Illumina, USA | 350 bp | 16.3 Gb | NA |
NA, not available.