Table 3.

Classification of repeat annotation in Triticum timopheevii.

	Class	Number of elements	Length occupied (bp)	Percentage of sequence
Retrotransposons	SINEs	20,589	1,759,774	0.02
	LINEs	150,497	116,697,520	1.25
	LTRs: Copia	535,455	1,620,870,187	17.33
	LTRs: Gypsy	1,690,034	3,873,777,180	41.43
	LTRs: Unknown	1,501,064	139,512,022	1.49
DNA transposons	hobo-Activator	20,177	6,117,182	0.07
	Tc1-IS630-Pogo	118,082	16,100,160	0.17
	Tourist/Harbinger	54,914	16,353,000	0.17
	Other	1,582,537	948,759,196	10.15
Unclassified	—	1,164,179	593,808,513	6.35
Total		6,837,528	7,333,754,734	78.43