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Oligonucleotide primer motifs and target genera
| Primer | Target site | Target genera |
|---|---|---|
| PROa | 5′V(F/L)(F/L/V)DTG(S/A)3′ (protease) | All |
| JOa | 5′YVDD(L/I/M)LI3′(RT)b | Spumaviruses |
| MLV-related viruses | ||
| CT | 5′(H/Q)YVDDLL3′(RT) | MLV-related viruses |
| EM | 5′YMDD(L/I/M)L(I/M)3′(RT) | HTLV-BLV group |
| ALV-related viruses | ||
| Type D viruses | ||
| Mammalian type B viruses | ||
| Lentiviruses |
PRO and JO are also capable of amplifying gypsy and copia LTR retrotransposons.
RT, reverse transcriptase.
