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Venn diagram of the prediction results among the base approaches (MetaMap, MonarchInitiative, PhenoTagger), the re-ranking approaches (MMRerank, MNIRerank, PTRerank), and the re-ranking without selection embedding (without SE) approaches (MMRerank without SE, MNIRerank without SE, PTRerank without SE) on (a) BiolarkgGSC+ and (b) COPD-HPO. The digits outside parentheses represent the number of predicted labels, and the ones in parentheses indicate the true positive among the predictions.
