Table III.
Amount and complexity of families in Arabidopsis and rice
The size (Members column) and number of clusters (Clusters column) within size intervals (Cluster Size column) are provided for both approaches (Method column): BCL and domain-based (HCL) clustering. The total number of proteins and clusters for each method is given in the same vertical arrangement. All percentage values are calculated relative to them. Readers should be aware that the provided information will be subject to future changes due to updates in the underlying sequence and domain databases. The most recent cluster statistics as well as version tracking data can be retrieved from http://bioinfo.ucr.edu/cgi-bin/clusterStats.pl.
| Cluster Size
|
Method
|
Arabidopsis
|
Rice
|
||
|---|---|---|---|---|---|
| Members | Clusters | Members | Clusters | ||
| 1 | BCL | 7,271 (25%) | 21,350 (36%) | ||
| HCL | 7,971 (28%) | 27,652 (46%) | |||
| 2–5 | BCL | 9,289 (32%) | 3,502 | 10,664 (18%) | 4,063 |
| HCL | 3,478 (12%) | 1,183 | 3,631 (6%) | 1,253 | |
| 6–10 | BCL | 3,513 (12%) | 477 | 3,667 (6%) | 487 |
| HCL | 2,764 (10%) | 370 | 2,710 (5%) | 360 | |
| 11–50 | BCL | 4,858 (17%) | 273 | 6,298 (11%) | 328 |
| HCL | 7,433 (26%) | 350 | 7,348 (12%) | 352 | |
| 51–100 | BCL | 1,650 (6%) | 25 | 1,885 (3%) | 29 |
| HCL | 2,709 (9%) | 39 | 3,889 (7%) | 56 | |
| ≥101 | BCL | 2,371 (8%) | 11 | 15,847 (27%) | 19 |
| HCL | 4,597 (16%) | 21 | 14,481 (24%) | 56 | |
| Total | BCL | 28,952 (100%) | 4,288 | 59,711 (100%) | 4,926 |
| HCL | 28,952 (100%) | 1,963 | 59,711 (100%) | 2,077 | |