Table III.
Putative functions of top 10 highly induced and suppressed genes in the resistant and susceptible libraries compared to that in the control libraries
| Contig ID | No. of ESTs in Infected Libraries | No. of ESTs in Control Library | Ratio of ESTs between Libraries | Putative Function/Homology | E-Value |
|---|---|---|---|---|---|
| Genes Induced in Resistant Libraries | |||||
| 00001_0083 | 202 | 1 | 202:1 | β-Glucanase | 10−135 |
| 01297_01 | 56 | 0 | 56:0 | No hit | |
| 00001_0147 | 43 | 1 | 43:1 | Aquaporin (tonoplast intrinsic protein 2.1) | 10−93 |
| 00001_0755 | 39 | 0 | 39:0 | No hit | |
| 00001_0967 | 37 | 1 | 37:1 | Aldehyde dehydrogenase | 0.0 |
| 00001_0111 | 33 | 1 | 33:1 | Heat shock protein 82 | 0.0 |
| 00001_0649 | 91 | 3 | 91:3 | Stem-specific protein | 10−23 |
| 00398_01 | 29 | 0 | 29:0 | No hit | |
| 00035_03 | 26 | 0 | 26:0 | Ser-glyoxylate aminotransferase | 10−111 |
| 00001_0328 | 52 | 2 | 52:2 | Isovaleryl-CoA dehydrogenase | 0.0 |
| Genes Suppressed in Resistant Libraries | |||||
| 00001_0057 | 1 | 36 | 1:36 | Ribulose bisphosphate carboxylase, C | 10−88 |
| 00001_0631 | 0 | 22 | 1:22 | PSI reaction center subunit psaK | 10−62 |
| 00562_02 | 1 | 22 | 1:22 | Plastocyanin | 10−62 |
| 00001_0990 | 2 | 44 | 2:44 | Chlorophyll a/b-binding protein | 10−152 |
| 00001_0822 | 0 | 18 | 0:18 | Hypothetical protein | 10−15 |
| 06576_01 | 1 | 16 | 0:16 | Carbonic anhydrase | 10−106 |
| 00001_0304 | 0 | 15 | 1:15 | PSI reaction center subunit V | 10−52 |
| 00001_0201 | 0 | 15 | 0:15 | No hit | |
| 00001_0835 | 0 | 14 | 0:14 | Thioredoxin M-type | 10−86 |
| 01910_01 | 0 | 13 | 0:13 | No hit | |
| Genes Induced in Susceptible Libraries | |||||
| 00001_0083 | 141 | 1 | 141:1 | Glucan endo-1,3-β-glucosidase | 10−135 |
| 04381_01 | 330 | 7 | 330:7 | Phe ammonia lyase | 0.0 |
| 00001_1509_01 | 39 | 1 | 39:1 | Heat shock protein 82 | 0.0 |
| 00001_0754 | 37 | 0 | 37:0 | No hit | |
| 000521_01 | 33 | 1 | 33:1 | No hit | |
| 00026_039 | 31 | 0 | 31:0 | Hypothetical protein | 10−25 |
| 00001_0849 | 31 | 1 | 31:1 | S-Adenosyl Met decarboxylase | 10−179 |
| 04481_01 | 30 | 1 | 30:1 | No hit | |
| 00001_0147 | 29 | 01 | 29:1 | Tonoplast intrinsic protein | 2.1×10−93 |
| 00001_0001 | 53 | 2 | 53:2 | No hit | |
| Genes Suppressed in Susceptible Libraries | |||||
| 00001_0521 | 0 | 26 | 0:26 | Ribulose bisphosphate carboxylase, subunit C | 10−87 |
| 00001_0631 | 0 | 22 | 0:22 | PSI subunit X | 10−62 |
| 07222_01 | 0 | 22 | 0:22 | PSII 10-kD polypeptide | 10−41 |
| 02552_01 | 0 | 21 | 0:21 | Light-regulated protein | 10−41 |
| 07167_01 | 1 | 20 | 1:20 | Ribulose bisphosphate carboxylase/oxygenase | 0.0 |
| 00040_04 | 2 | 37 | 2:37 | DNA methyltransferase 1-associated protein | 10−12 |
| 02546_01 | 0 | 16 | 0:16 | No hit | |
| 06576_01 | 0 | 16 | 0:16 | Carbonic anhydrase | 10−106 |
| 00001_0730 | 4 | 61 | 4:61 | Chlorophyll a/b-binding protein CP26 | 10−116 |
| 00001_0304 | 0 | 15 | 0:15 | PSI reaction center subunit V | 10−51 |