Table V.
Comparative matching of the rice ESTs isolated in this study to the ESTs of Arabidopsis, barley, sorghum, wheat, and maize collected in TIGR gene indices
The criteria for stand-alone BLASTn were: (1) exact-match bp = 11; (2) E-value ≤ 1E5; and (3) identity ≥80% and 90% at DNA sequence level.
| TIGR Gene Indices
|
No. of ESTs Matched to TIGR Gene Index (%)
|
|||
|---|---|---|---|---|
| MGOS ESTs (13,570)
|
TIGR ESTs (88,765)
|
|||
| Identity ≥80% | Identity ≥90% | Identity ≥80% | Identity ≥90% | |
| Arabidopsisa | 1,145 (8.4) | 1,145 (2.4) | 10,716 (12.07) | 2,952 (3.33) |
| Barleyb | 5,182 (38.2) | 1,295 (9.5) | 26,015 (29.31) | 8,008 (9.02) |
| Sorghumc | 8,569 (63.2) | 2,155 (15.9) | 39,041 (43.98) | 11,480 (12.93) |
| Wheatd | 4,768 (35.1) | 1,347 (9.9) | 23,070 (25.99) | 7,707 (8.68) |
| Maizee | 4,324 (31.9) | 953 (7.0) | 21,187 (23.87) | 6,069 (6.84) |
a
Arabidopsis gene index release 11.0 (Jan. 12, 2004) composed of 45,683 unique sequences.
b
Barley gene index release 8.0 (Jan. 9, 2004) composed of 49,190 unique sequences.
c
Sorghum gene index release 8.0 (May 11, 2004) composed of 39,148 unique sequences.
d
Wheat gene index release 8.0 (Dec. 25, 2003) composed of 123,807 unique sequences.
e
Maize gene index release 14.0 (Dec. 23, 2003) composed of 56,364 unique sequences.