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Germline and somatic variant calling evaluation of high-confidence calls using ground-truth benchmarking data with respect to SNPs. (A, B) The germline variant calling track of the pipeline was evaluated using 3 WGS GiaB datasets (HG002–HG004). The average precision, recall, and F1-score values across all the samples are plotted, respectively. (C, D) The somatic paired variant calling track was evaluated using three tumor-normal WES pairs (EA, FD, NV) from SEQ2C.
