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. 2024 Apr 2;4(4):100741. doi: 10.1016/j.crmeth.2024.100741
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

APC-Cy7 rat anti-mouse CD326 clone G8.8 (EpCAM) BioLegend Cat# 118217; RRID: AB_1501158
PE-Cy7 rat anti-human CD49f clone GoH3 BioLegend Cat# 313622; RRID: AB_2561705
eFluor™ 450 rat anti-mouse CD31 clone 390 ThermoFisher Cat# 48-0311-82; RRID: AB_10598807
eFluor™ 450 rat anti-mouse CD45 clone 30-F11 ThermoFisher Cat# 48-0451-82; RRID: AB_1518806
eFluor™ 450 rat anti-mouse TER-119 clone TER-119 ThermoFisher Cat# 48-5921-82; RRID: AB_1518808
APC Mouse Anti-Mouse CD36 clone CRF D-2712 BD Biosciences Cat# 562744; RRID: AB_2737763
APC rat anti-mouse CD326 clone G8.8 (EpCAM) BioLegend Cat# 118214; RRID: AB_1134102
PE Mouse Anti-Mouse CD36 clone CRF D-2712 BD Biosciences Cat# 562702; RRID: AB_2737732

Critical commercial assays

MTR CM-H2Xros ThermoFisher M7513
BODIPY™ FL C12 ThermoFisher D3822

Deposited data

Raw mass spectrometry data This study MassIVE: MSV000092829
Processed mass spectrometry data This study See Table S4

Experimental models: Cell lines

Human: Hs 578T ATCC HTB-126
Human: HCC1187 ATCC CRL-2322
Human: MCF10A ATCC CRL-10317
Human: MDA-MB-157 ATCC HTB-24

Experimental models: Organisms/strains

Mouse: 8- to 12-week-old virgin female FVB wild-type mice The Jackson Laboratory or Charles River 001800 or 207

Software and algorithms

MSFragger (v.3.8) run using FragPipe (v.20.0) Kong et al.46 and Teo et al.47 N/A
ProteinProphet Nesvizhskii et al.48 N/A
Percolator Käll et al.49 N/A
IonQuant v.1.9.8: Yu et al.50 N/A
Philosopher v.5.0.0 da Veiga Leprevost et al.51 N/A

Other

Orbitrap Fusion Tribrid mass spectrometer Thermo Scientific N/A
EASY-nLC 1000 HPLC system Thermo Scientific N/A
Teflon-coated microscope slides Tekdon N/A
Microscrope slide holder This study N/A
ImageStream AMNIS MKII imaging flow cytometer Cytek Biosciences N/A
FACS ARIA Fusion Flow Cytometer BD Biosciences N/A