Table 1.
Detailed information and serotyping analysis of 21 isolates collected in Shanghai Port, China
| Information of epidemiological survey | Result of genome sequencing | ST | VPsero serotype | Kaptive serotype | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Date | Region | Gender | Age | Gene | Protein | RNA | Scaffold | Length (bp) | O-loci | K-loci | Ox:Ky | O- loci | K-loci | OLx:KLy | |
| SHP-1108 | 8/31/2017 | Philippines | Male | 24 | 4,748 | 4,748 | 116 | 17 | 5,190,976 | 3 | 7 | 68 | O7:K68 | OL4-1 | KL68-1 | OL4-1:KL68-1 |
| SHP-1117 | 10/10/2017 | Viet Nam | Female | - | 4,581 | 4,581 | 119 | 17 | 5,078,856 | 3 | 3 | 6 | O3:K6 | OL3_or_OL13 | KL6 | OL3_or_OL13:KL6 |
| SHP-1177 | 10/11/2017 | Philippines | Female | - | 4,666 | 4,666 | 111 | 33 | 5,157,286 | 17 | 12 | 4 | O12:K4 | OL4 | KL4 | OL4:KL4 |
| SHP-1179 | 6/20/2017 | Thailand | Female | 56 | 4,602 | 4,602 | 110 | 22 | 5,038,963 | 2516 | 4 | 8 | O4:K8 | OL4 | KL8 | OL4:KL8 |
| SHP-1269 | 8/6/2017 | Hong Kong, China | Female | 11 | 4,603 | 4,603 | 114 | 13 | 5,104,622 | 3 | 3 | 6 | O3:K6 | OL3_or_OL13 | KL6 | OL3_or_OL13:KL6 |
| SHP-1361 | 4/8/2017 | Japan | Male | 22 | 4,729 | 4,729 | 106 | 36 | 5,108,367 | - | 2 | - | - | OL2 | KL22 | OL2:KL22 |
| SHP-1429 | 9/13/2017 | Thailand | Female | 40 | 4,669 | 4,669 | 102 | 18 | 5,153,566 | - | 12 | 55 | O12:K55 | OL4 | KL55 | OL4:KL55 |
| SHP-1434 | 8/12/2017 | Thailand | Female | 28 | 4,625 | 4,625 | 119 | 24 | 5,075,979 | 3 | 3 | 6 | O3:K6 | OL3_or_OL13 | KL6 | OL3_or_OL13:KL6 |
| SHP-1678 | 8/19/2017 | Thailand | - | - | 4,652 | 4,652 | 121 | 20 | 5,127,586 | 3 | 3 | 6 | O3:K6 | OL3_or_OL13 | KL6 | OL3_or_OL13:KL6 |
| SHP-1433 | 2/26/2018 | Philippines | Female | 34 | 4,615 | 4,615 | 120 | 21 | 5,093,560 | 3 | 3 | 6 | O3:K6 | OL3_or_OL13 | KL6 | OL3_or_OL13:KL6 |
| SHP-1611 | 5/21/2018 | Thailand | Male | 32 | 4,606 | 4,606 | 104 | 29 | 4,990,142 | 635 | - | - | - | OL1 | KL118 | OL1:KL118 |
| SHP-1675 | 8/12/2018 | Thailand | Female | 10 | 4,548 | 4,548 | 112 | 25 | 4,991,106 | - | 12 | - | - | OL10 | KL24 | OL10:KL24 |
| SHP-1847 | 3/17/2018 | Thailand | Male | 36 | 4,576 | 4,576 | 126 | 22 | 5,077,773 | 3 | 3 | 6 | O3:K6 | OL3_or_OL13 | KL6 | OL3_or_OL13:KL6 |
| SHP-1926 | 3/21/2018 | Thailand | Male | 32 | 4,688 | 4,688 | 122 | 24 | 5,128,246 | 3 | 3 | 6 | O3:K6 | OL3_or_OL13 | KL6 | OL3_or_OL13:KL6 |
| SHP-1949 | 6/21/2018 | Thailand | Female | 44 | 4,647 | 4,647 | 115 | 15 | 5,056,207 | - | 12 | 9 | O12:K9 | OL4 | KL9 | OL4:KL9 |
| SHP-1780 | 9/14/2018 | Malaysia | Female | 11 | 4,763 | 4,763 | 115 | 15 | 5,190,902 | 3 | 4 | 68 | O4:K68 | OL4 | KL68-1 | OL4:KL68-1 |
| SHP-3796 | 12/23/2018 | Thailand | Male | 66 | 4,629 | 4,629 | 99 | 42 | 5,068,935 | 199 | - | - | - | OL1 | KL123 | OL1:KL123 |
| SHP-8214 | 12/19/2018 | Malaysia | Female | 35 | 4,604 | 4,604 | 98 | 36 | 5,015,880 | 2516 | 12 | 8 | O12:K8 | OL4 | KL8 | OL4:KL8 |
| SHP-8216 | 12/19/2018 | Indonesia | Female | 40 | 4,614 | 4,614 | 95 | 34 | 5,021,272 | 2516 | 12 | 8 | O12:K8 | OL4 | KL8 | OL4:KL8 |
| SHP-3690 | 7/4/2019 | Thailand | Female | 45 | 4,622 | 4,622 | 98 | 51 | 5,079,348 | - | 1 | - | - | OL1 | KL123 | OL1:KL123 |
| SHP-8502 | 8/14/2019 | Thailand | Female | 33 | 4,721 | 4,721 | 98 | 40 | 5,107,560 | 2516 | 12 | - | - | OL4 | KLUT5 | OL4:KLUT5 |