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. 2024 Apr 3;31(4):2024–2046. doi: 10.3390/curroncol31040150
4EBP1 Eukaryotic Translation Initiation Factor 4E Binding Protein 1, encoded by the gene EIF4EBP1.
ALK ALK Receptor Tyrosine Kinase, also known as Anaplastic Lymphoma Kinase.
Amplification An increase in the number of copies in a region of the genome.
APC APC Regulator Of WNT Signaling Pathway, also known as Adenomatous Polyposis Coli.
ARAF A-Raf Proto-Oncogene, Serine/Threonine Kinase.
ARF One of the proteins encoded by the gene Cyclin Dependent Kinase Inhibitor 2A, or CDKN2A. Also known as p19-ARF.
AURKA Aurora Kinase A.
BiTE Bispecific T-cell engager.
BRAF B-Raf Proto-Oncogene, Serine/Threonine Kinase.
CAB39 Calcium-Binding Protein 39.
CAS9 CRISPR-associated protein 9, used together with CRISPR to cleave DNA.
CCL2 C-C Motif Chemokine Ligand 2.
CDK4 Cyclin-Dependent Kinase 4.
CDK6 Cyclin-Dependent Kinase 6.
CDKN2A Cyclin-Dependent Kinase Inhibitor 2A, encodes p16-INK4A and ARF.
CDKN2B Cyclin-Dependent Kinase Inhibitor 2B
COVID-19 Coronavirus disease of 2019, caused by the virus SARS-CoV-2
CRAF Raf-1 Proto-Oncogene, Serine/Threonine Kinase, also known as RAF1.
CRC Colorectal carcinoma or colorectal cancer.
CRISPR Clustered Regularly Interspaced Short Palindromic Repeats, often used to knock out a gene of interest.
CRISPRi Inhibitory form of CRISPR that uses dead Cas9 deficient at cutting DNA to recruit negative regulatory transcription factors to the promoter of a gene of interest.
CTLA-4 Cytotoxic T-Lymphocyte-Associated Protein 4, an immune checkpoint protein.
CTNNB1 Catenin Beta 1, also known as β-catenin.
CYCA Cyclophilin A.
Cyclins A family of proteins that bind to cyclin-dependent kinases and regulate cell cycle.
DC Dendritic cell.
DTP Drug tolerant persister cells.
DUSPs Dual-Specificity Phosphatase protein family.
E2F E2F Transcription Factor.
EGF Epidermal Growth Factor.
EGFR Epidermal Growth Factor Receptor.
EMT Epithelial-to-mesenchymal transition.
ERK1 Mitogen-Activated Protein Kinase 3, also known as Extracellular Signal-Regulated Kinase 1, a protein encoded by the gene MAPK3.
ERK2 Mitogen-Activated Protein Kinase 2, also known as Extracellular Signal-Regulated Kinase 2, a protein encoded by the gene MAPK1.
FDA United States Food and Drug Administration.
FGFR Fibroblast Growth Factor Receptor 1.
G12Ci An inhibitor that is selective for KRAS with the 12th amino acid altered from glycine to cysteine.
GAB1 GRB2-associated binding protein 1.
GAP GTPase-activating protein, promotes hydrolysis of GTP to GDP
GDP Guanosine diphosphate. KRAS is inactive when bound to GDP.
GEF Guanine nucleotide exchange factor, promotes exchange of GDP to GTP
GM-CSF Granulocyte-macrophage colony-stimulating factor, also known as colony-stimulating factor 2.
GRB2 Growth Factor Receptor Bound Protein 2.
GTP Guanosine triphosphate. KRAS is active when bound to GTP.
HDAC5 Histone Deacetylase 5.
HLA Human leukocyte antigens.
HRAS HRas Proto-Oncogene, GTPase, also known as Harvey Rat Sarcoma Viral Oncoprotein.
ICMT Isoprenylcysteine Carboxyl Methyltransferase.
IDH1 Isocitrate Dehydrogenase (NADP(+)) 1.
IDH2 Isocitrate Dehydrogenase (NADP(+)) 2.
IRE1α Endoplasmic Reticulum To Nucleus Signaling 1, encoded by the gene ERN1.
KEAP1 Kelch-Like ECH-Associated Protein 1.
KRAS KRAS Proto-Oncogene, GTPase, also known as Kirsten Rat Sarcoma Viral Proto-Oncogene and also abbreviated at K-Ras.
KRASi An entity that inhibits KRAS.
KSR Kinase Suppressor Of Ras 1, encoded by the gene KSR1.
MDR1 ATP-Binding Cassette Subfamily B Member 1, also known as Multidrug Resistance Protein 1, encoded by the gene ABCB1.
MEK Mitogen-Activated Protein Kinase Kinase 1, encoded by the gene MAP2K1.
MET MET Proto-Oncogene, Receptor Tyrosine Kinase.
MHC Major histocompatibility complex.
MRAS Muscle RAS Oncogene Homolog.
mTCR Murine T-cell receptor.
mTOR Mechanistic Target Of Rapamycin Kinase.
MYC MYC Proto-Oncogene, BHLH Transcription Factor, also known as c-MYC and as Avian Myelocytomatosis Viral Oncogene Homolog.
NF1 Neurofibromatosis type 1.
NRAS NRAS Proto-Oncogene, GTPase, also known as Neuroblastoma RAS Viral (V-Ras) Oncogene Homolog.
NSCLC Non-small cell lung cancer.
p53 Tumor Protein P53, encoded by the gene TP53.
PD-1 Programmed Cell Death Protein 1.
PDAC Pancreatic ductal adenocarcinoma.
PD-L1 CD274 Molecule, also known as Programmed Cell Death 1 Ligand 1, encoded by the gene CD274.
PTCH1 Patched 1.
SHP2 Protein Tyrosine Phosphatase Non-Receptor Type 11, encoded by the gene PTPN11.
PBL Peripheral blood lymphocytes.
PIK3CA Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Catalytic Subunit Alpha, also known as PtdIns-3-Kinase Subunit P110-Alpha, encodes the p110α subunit of PI3K.
PIP2 Phosphatidylinositol 4,5-bisphosphate.
PIP3 Phosphatidylinositol-3,4,5-triphosphate.
PNA Peptide nucleic acid, a synthetic molecule hybridizing DNA bases with a peptide polymer chain.
PREX1 Phosphatidylinositol-3,4,5-Trisphosphate Dependent Rac Exchange Factor 1.
PROTAC Proteolysis targeting chimeras containing a domain binding the protein of interest linked to a domain that recruits an E3 ubiquitin ligase.
PTEN Phosphatase And Tensin Homolog, also known as Phosphatidylinositol 3,4,5-Trisphosphate 3-Phosphatase And Dual-Specificity Protein Phosphatase PTEN.
RAB RAB1A, Member of RAS Oncogene Family.
RAN RAN, Member of RAS Oncogene Family.
RAS-GAP RAS P21 Protein Activator 1, also known as p120GAP, encoded by the gene RASA1.
RB1 RB Transcriptional Corepressor 1, also known as Retinoblastoma 1.
RCE1 Ras Converting CAAX Endopeptidase 1.
RET Ret Proto-Oncogene, also known as Rearranged During Transfection.
RGS Regulator Of G Protein Signaling.
RHO Rhodopsin.
RICTOR RPTOR Independent Companion Of MTOR Complex 2.
RSK1 Ribosomal Protein S6 Kinase A1.
S6 Ribosomal Protein S6.
SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2, the virus that causes COVID-19.
SHOC2 SHOC2 Leucine Rich Repeat Scaffold Protein.
siRNA Small interfering ribonucleic acid, used to decrease expression of target messenger RNAs.
SMARCA4 SWI/SNF Related, Matrix Associated, Actin-Dependent Regulator Of Chromatin, Subfamily A, Member 4.
SOS1 SOS Ras/Rac Guanine Nucleotide Exchange Factor 1, also known as Son Of Sevenless Homolog 1.
SPRED1 Sprouty-Related EVH1 Domain Containing 1.
SPRY1 Sprouty RTK Signaling Antagonist 1.
Synthetic lethal/collateral dependency Two genes whose alterations are lethal to cells only when they are in combination.
TCR T-cell receptor.
TEAD TEA Domain Transcription Factor 1.
TGFβ Transforming Growth Factor Beta 1.
TME Tumor microenvironment.
TSC1 TSC Complex Subunit 1, also known as Tuberous Sclerosis 1 Protein.
TSC2 TSC Complex Subunit 2, also known as Tuberous Sclerosis 2 Protein.
UGP2 UDP-Glucose Pyrophosphorylase 2.
VEGF Vascular Endothelial Growth Factor.
YAP Yes1-Associated Transcriptional Regulator.