Table 3.

HapFLK blocks revealed in the genomes of the studied chicken breeds ¹.

Chromosome	Breed	Position		Length, Mb	No. of SNPs	Most Significant SNP	Genes
		Start	End
GGA1	CRW	53,119,864	53,212,505	0.093	82	rs15269046	SYN3, TIMP3
	PRW	53,637,245	54,504,503	0.867	569	rs314634881	NUAK1, C12orf75, MTERF2, TMEM263, RIC8B, RFX4, POLR3B, CRY1, APPL2, WASHC4, ALDH1L2, SLC41A2, CHST11, TCP11 × 2, CKAP4, gga-mir-12210
GGA6	USH	8,693,825	8,814,126	0.120	108	rs315872719	KROX20, ADO
GGA16	USH	2,090,051	2,170,380	0.080	190	rs737045576	IL4I1, TRIM7.1, SLURP1, TRIM39.2, TRIM27.2, TRIM39.1, TRIM27.1, TRIM41, RACK1, BG1
	USH	2,230,563	2,248,418	0.018	95	rs740720869	CENPA, CYP21A1
GGA31	PRW	626,104	665,706	0.040	421	31:6,534,09	–

¹ Breeds: CRW, Cornish White; PRW, Plymouth Rock White; USH, Ushanka. SNP significance level: p < 1 × 10⁻⁵. Genes in or near which the most significant SNP in the region is located are highlighted in bold. Genes identified at a significance level of p < 2.8 × 10⁻⁸ are underlined.