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. 2024 Apr 29;15:3644. doi: 10.1038/s41467-024-47254-z

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© The Author(s) 2024

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — A Maximum-likelihood phylogenetic tree of HIV-1 sequences that passed QC. Bootstrap support indicated at nodes. Clusters as defined by Cluster Picker using genetic distance threshold of 4.5 and statistical support by bootstrapping of >98% are coloured. B Linkage and resistance data on largest cluster with 6 participants. C Linkage and resistance data on the second largest cluster with 5 participants. Blue lines indicate >95% confidence and green indicate >80% confidence.