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. 2024 Apr 30;25:171. doi: 10.1186/s12859-024-05788-5

Table 2.

Data transformation methods.

RAW No transformation
Log2 E=Log2(e+1)
Total E=esum(e)20000
l2-norm E=esum(e2)
Minmax E=e-min(e)max(e)-min(e)
Z-score E=e-mean(e)std(e)

Where e is a vector of gene expression level in a cell

We used six statistics to transform single-cell RNA sequencing data. These statistics are widely used in sequencing data analysis studies