TABLE 3.
Variety | No. of samples analyzed |
P. savastanoi pv. savastanoi detection (no. of positive samples)a
|
|||||
---|---|---|---|---|---|---|---|
Without preenrichment
|
With preenrichment
|
||||||
King's B
|
PVF-1
|
||||||
Bacterial isolation | PCR and restriction analysis | Bacterial isolation | PCR and restriction analysis | Bacterial isolation | PCR and restriction analysis | ||
Blanqueta | 6 | 1 | 0 | 0 | 1 | 0 | 3 |
Gordal | 3 | 2 | 0 | 0 | 3 | 1 | 2 |
Manzanilla | 6 | 2 | 0 | 3 | 4 | 0 | 5 |
Picual | 20 | 5 | 4b | 4 | 6 | 4 | 10 |
Picudo | 3 | 0 | 0 | 1 | 2 | 1 | 3 |
Total no. of samples | 38 | 10 | 4 | 8 | 16 | 6 | 23 |
That is, the number of samples in which P. savastanoi pv. savastanoi was detected. Bacterial isolations were performed by plating serial dilutions on King's B and PVF-1 media, and after bacterial purifications, isolates were identified as described in Materials and Methods. PCR amplification was done by using the primer pair IAALF-IAALR, and subsequently, the amplified product was digested with the restriction enzyme HaeIII as described in Materials and Methods.
One of these amplified fragments was double strand sequenced, thus verifying iaaL detection.