Table 2.

Tool availability: summary representation of tools available to account holders in the Cloud Resources.

Tool category	Tools	Broad FireCloud	ISB-CGC	SB-CGC
Workflows	CWL Workflow support	✓	✓	✓
	WDL Workflow support	✓	✓	✓
	Nextflow Workflow support	Coming soon	✓	✓
	Publicly available workflows from Dockstore	✓	✓	✓
Analysis types	Existing workflows and tools used by community	Variant calling (long and short reads), GWAS, RNAseq, ML, Epigenomics, Fusion Detection	Variant calling (short reads), RNAseq, ML, CNV, Epigenomics, correlations using BigQuery derived datasets	Variant calling (long and short reads), GWAS, Bulk RNAseq, Single-Cell RNAseq, ML, Epigenomics, Multiomics, Proteomics, Fusion Detection, Imaging Analysis
Tutorials	Example tool analysis projects	✓	✓	✓
Interactive applications	Jupyter	✓	✓	✓
	RStudio	✓	✓	✓
	RShiny Apps	Coming soon	✓	✓
	Galaxy	✓		✓
	SAS			Coming soon
	Command line sessions	Coming soon	✓	✓
	Interactive querying (BigQuery, etc)		✓	✓
User-driven content	User written workflow support	✓	✓	✓
	User created interactive apps	Coming soon	✓	✓
	User defined project resources		✓	✓
Analytic workspaces	APIs for scripting	✓	✓	✓
	Bring your own data	✓	✓	✓
	Access controlled data	✓	✓	✓
Cloud native tool support	Billing	Cloud-specific	Cloud-specific	Integrated
	Command line tools, e.g., gsutil	✓	✓	via Python / R
	Make use of Cloud-specific tools such as TensorFlow, BigQuery, etc.	✓	✓	✓
	STRIDES support	✓	✓	Coming soon

Note: Tools are broken down by category and status of tool availability within each CR.