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. 2024 Mar 18;20(5):549–572. doi: 10.1038/s44320-024-00030-z

Reagents and tools table

Software
FoldX 5.0 https://foldxsuite.crg.eu/ Delgado et al, 2019. Bioinformatics
MutateX 1.0 https://github.com/ELELAB/mutatex Tiberti et al, 2022. Brief Bioinform.
DSSP 2.2.1 https://swift.cmbi.umcn.nl/gv/dssp/ Kabsch and Sander, 1983. Biopolymers
CD-Hit 4.8.1 https://sites.google.com/view/cd-hit Li and Godzik, 2006. Bioinformatics; Fu, et al, 2012. Bioinformatics.
Python 3.8 https://www.python.org/downloads/ van Rossum and Drake, 2009.
Databases
Evolutionary Classification of Protein Domains (ECOD) http://prodata.swmed.edu/ecod/ Cheng et al, 2014. PLoS Comput. Biol.
Protein Data Bank (PDB) https://www.rcsb.org/ Berman et al, 2000. Nuc. Ac. Res.