Table 3. Crystallographic refinement statistics.
Values in parentheses are for the highest resolution shell.
Structure | D07 | E01 | E05 | B06 | B04 | H04 | C11 | C08 |
---|---|---|---|---|---|---|---|---|
PDB code | 8s47 | 8s46 | 8s45 | 8s49 | 8s4a | 8s4c | 8s48 | 8s4b |
Resolution range (Å) | 46.04–2.11 | 45.84–1.99 | 39.72–1.69 | 45.71–1.70 | 45.54–2.23 | 45.61–1.80 | 35.74–1.65 | 45.58–2.15 |
Reflections used, refinement | 41687 (2736) | 44268 (2726) | 74809 (2708) | 73647 (2829) | 31404 (2885) | 65236 (2875) | 79766 (2847) | 36122 (2755) |
Reflections used for R free | 2083 (139) | 2219 (146) | 3748 (137) | 3698 (142) | 1572 (142) | 3278 (147) | 3989 (145) | 1801 (126) |
R work | 0.2059 (0.4197) | 0.2247 (0.4747) | 0.1964 (0.5552) | 0.1974 (0.5124) | 0.2008 (0.3377) | 0.2015 (0.4860) | 0.1908 (0.5033) | 0.2400 (0.4334) |
R free | 0.2402 (0.5195) | 0.2587 (0.4941) | 0.2357 (0.6358) | 0.2207 (0.4554) | 0.2436 (0.3930) | 0.2268 (0.5125) | 0.2187 (0.5334) | 0.2774 (0.4832) |
No. of non-H atoms | ||||||||
Total | 2495 | 2418 | 2604 | 2532 | 2485 | 2576 | 2674 | 2415 |
Macromolecules | 2366 | 2344 | 2416 | 2383 | 2332 | 2414 | 2428 | 2326 |
Ligands | 38 | 13 | 17 | 14 | 33 | 11 | 19 | 12 |
Solvent | 91 | 61 | 171 | 135 | 120 | 151 | 227 | 77 |
Protein residues | 308 | 305 | 310 | 308 | 304 | 314 | 311 | 302 |
R.m.s.d., bond lengths (Å) | 0.002 | 0.002 | 0.010 | 0.009 | 0.003 | 0.004 | 0.008 | 0.002 |
R.m.s.d., angles (°) | 0.42 | 0.49 | 0.93 | 0.97 | 0.54 | 0.70 | 0.83 | 0.42 |
Ramachandran favored (%) | 98.68 | 99.34 | 99.35 | 98.68 | 97.67 | 99.35 | 98.37 | 96.64 |
Ramachandran allowed (%) | 1.32 | 0.66 | 0.65 | 1.32 | 2.33 | 0.65 | 1.63 | 3.36 |
Ramachandran outliers (%) | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Rotamer outliers (%) | 2.65 | 1.14 | 1.11 | 1.12 | 0.00 | 0.37 | 1.84 | 2.30 |
Clashscore | 1.65 | 2.52 | 2.45 | 3.10 | 2.31 | 1.22 | 2.84 | 1.06 |
Average B factor (Å2) | ||||||||
Overall | 62.68 | 60.48 | 43.22 | 47.51 | 50.42 | 54.82 | 44.81 | 53.12 |
Macromolecules | 62.40 | 60.57 | 43.07 | 47.22 | 50.21 | 54.48 | 44.45 | 53.31 |
Ligands | 77.62 | 65.78 | 41.50 | 53.99 | 64.16 | 80.38 | 48.22 | 45.93 |
Solvent | 63.74 | 56.01 | 45.50 | 51.97 | 50.88 | 58.50 | 48.36 | 48.49 |