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. 2024 Mar;34(3):454–468. doi: 10.1101/gr.278268.123

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© 2024 Lorig-Roach et al.; Published by Cold Spring Harbor Laboratory Press

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Figure 5. — The two types of Shasta output graphs, visualized as a 2D layout in Bandage (Wick et al. 2015) at two different scales. (A) A subregion of the “Assembly-Detailed.gfa,” showing near-variant scale nodes in a bubble chain and their phasing indicated by colors produced by Shasta. (B) A subregion of the “Assembly-Phased.gfa” showing a phased portion of Chr 11 from HG002, which terminates at two tangles, presumably caused by telomeric and centromeric sequences.