Table 3.
Overlapping significant regions identified through Fst, pi, and cross-population composite likelihood ratio (XP-CLR) and associated genes in Brown Tsaiya ducks.
| Gene | Full name | Chromosome | Location (bp)1 | Length (bp)1 | Number (SNP)2 |
|---|---|---|---|---|---|
| TSPAN8 | Tetraspanin 8 | 1 | 37426355-37505746 | 79391 | 2 |
| SLC4A7 | Solute carrier Family 4 Member 7 | 2 | 40756860-41023690 | 266830 | 0 |
| GMDS | GDP-mannose 4,6-dehydratase | 2 | 79265182-79671011 | 405829 | 67 |
| LRFN2 | Leucine-rich repeat and fibronectin type III domain containing 2 | 3 | 31578187-31799373 | 221186 | 0 |
| TMEM63B | Transmembrane protein 63B | 3 | 33884914-33910150 | 25236 | 9 |
| PLD5 | Phospholipase D family member 5 | 3 | 39264361-39411447 | 147086 | 1 |
| PDIA6 | Protein disulfide isomerase family A member 6 | 3 | 76340827-76361379 | 20552 | 1 |
| ATP6V1C2 | ATPase H+ transporting V1 subunit C2 | 3 | 76352052-76370640 | 18588 | 1 |
| ODC1 | Ornithine decarboxylase 1 | 3 | 76457110-76500422 | 43312 | 0 |
| ITGB1BP1 | Integrin subunit beta 1 binding protein 1 | 3 | 77064448-77071033 | 6585 | 1 |
| CCDC149 | Coiled-coil domain containing 149 | 4 | 35632538-35680171 | 47633 | 0 |
| RBPJ | Recombination signal binding protein for immunoglobulin kappa J region | 4 | 35946940-36092637 | 145697 | 0 |
| MAML3 | Mastermind like transcriptional coactivator 3 | 4 | 56585225-56781405 | 196180 | 10 |
| LRP4 | LDL receptor-related protein 4 | 5 | 32874741-32912588 | 37847 | 27 |
| AKT1 | AKT serine/threonine kinase 1 | 5 | 55272740-55337060 | 64320 | 16 |
| LY75 | Lymphocyte antigen 75 | 7 | 20553853-20598781 | 44928 | 0 |
| ARHGAP15 | Rho GTPase activating protein 15 | 7 | 31076813-31407565 | 330752 | 0 |
| PEX5L | Peroxisomal biogenesis factor 5 like | 9 | 18643390-18680809 | 37419 | 0 |
| FNTA | Farnesyltransferase, CAAX box, alpha | Z | 52676230-52686816 | 10586 | 0 |
1
Source: Reference cau_duck1.0 primary assembly (Ensembl).
2
The number of genomes significant SNP located in gene identified in genome-wide association analysis.