Table 2. Contigs and singletons produced by Phrap, CAP3, TA-EST and TIGR Assembler for four representative ‘large’ clusters of rat sequences.
Cluster (no. of ESTs) | Contigs/singletons produced | |||
---|---|---|---|---|
Phrap | CAP3 | TA-EST | TIGR Assembler | |
1. (135) | 11/0 | 17/0 | 21/43 | 25/41 |
2. (270) | 25/1 | 35/1 | 37/125 | 42/126 |
3. (540) | 1/0 | 1/0 | 2/2 | 3/12 |
4. (1791) | 15/0 | 18/7 | 28/62 | 71/229 |
Total | 52/1 | 61/8 | 88/232 | 141/408 |