Table 4. Radiation hybrid mapping data for a representative sample of THCs from HGI5.0 that contain multiple, independently mapped markers.
THC ID | Marker position | RHDB ID | Chromosome | Location | Panel | Score |
---|---|---|---|---|---|---|
THC403868 | 766–890 | RH53683 | 14 | 281.46 | GB4 | P = 1.70 |
THC403868 |
766–890 |
RH14883 |
14 |
4460 |
G3 |
F |
THC403877 | 71–335 | RH26593 | 6 | 105.5 | GB4 | P > 3.00 |
THC403877 | 74–212 | RH46761 | 6 | 105.5 | GB4 | P > 3.00 |
THC403877 | 1224–1344 | RH46705 | 6 | 105.5 | GB4 | P > 3.00 |
THC403877 |
1414–1661 |
RH26034 |
6 |
105.5 |
GB4 |
P > 3.00 |
THC403892 | 552–748 | RH24987 | 9 | 404 | GB4 | P > 3.00 |
THC403892 | 594–798 | RH11721 | 9 | 403.9 | GB4 | P > 3.00 |
THC403892 |
660–798 |
RH13861 |
9 |
4806 |
G3 |
F |
THC403910 | 830–989 | RH44275 | 10 | 547.83 | GB4 | P = 2.44 |
THC403910 |
916–1036 |
RH16755 |
10 |
548.62 |
GB4 |
P = 1.28 |
THC403911 | 50–149 | RH51822 | 11 | 247.67 | GB4 | P = 2.48 |
THC403911 | 86–185 | RH27455 | 11 | 247.67 | GB4 | P = 2.48 |
THC403911 |
86–185 |
RH10295 |
11 |
242.54 |
GB4 |
P = 0.00 |
THC403912 | 2–101 | RH51822 | 11 | 247.67 | GB4 | P = 2.48 |
THC403912 | 38–137 | RH27455 | 11 | 247.67 | GB4 | P = 2.48 |
THC403912 |
38–137 |
RH10295 |
11 |
242.54 |
GB4 |
P = 0.00 |
THC403923 | 597–759 | RH15921 | 19 | 216.04 | GB4 | P = 0.01 |
THC403923 |
1179–1280 |
RH16797 |
19 |
214.04 |
GB4 |
P = 1.26 |
THC403929 | 1637–1761 | RH12769 | 2 | 574.71 | GB4 | P > 3.00 |
THC403929 | 1773–1903 | RH56254 | 2 | 573.36 | GB4 | P = 1.03 |
THC403929 | 1908–2241 | RH14021 | 2 | 8064 | G3 | F |
THC403929 | 1918–2049 | RH70825 | 2 | 572.14 | GB4 | P = 0.84 |
THC403929 |
1929–2217 |
RH56929 |
2 |
557.16 |
GB4 |
P = 0.96 |
THC403934 | 755–883 | RH39372 | 17 | 295.52 | GB4 | P = 0.76 |
THC403934 |
793–998 |
RH76470 |
17 |
293.11 |
GB4 |
P = 0.02 |
THC403947 | 22–122 | RH49734 | 1 | 145.4 | GB4 | P = 1.33 |
THC403947 |
1431–1555 |
RH50152 |
1 |
145.91 |
GB4 |
P = 1.12 |
THC403950 | 1724–1872 | RH78931 | 11 | 18.46 | GB4 | P = 0.36 |
THC403950 | 1745–1920 | RH32214 | 11 | 17 | G3 | P = 1.62 |
THC403950 |
1766–1877 |
RH27310 |
11 |
4.63 |
GB4 |
P = 2.39 |
THC403956 | 2300–2430 | RH91675 | 16 | 194.86 | GB4 | F |
THC403956 |
2300–2430 |
RH79175 |
16 |
193.96 |
GB4 |
P = 0.33 |
THC403987 | 25–174 | RH55229 | 17 | 329.2 | GB4 | P = 1.52 |
THC403987 | 25–174 | RH14431 | 17 | 2298 | G3 | P = 0.47 |
THC403987 |
353–473 |
RH70694 |
17 |
319.86 |
GB4 |
P = 2.12 |
THC404053 | 354–470 | RH44831 | 12 | 401.81 | GB4 | P > 3.00 |
THC404053 | 557–686 | RH52825 | 12 | 400.21 | GB4 | P > 3.00 |
THC404053 | 1146–1390 | RH75162 | 14 | 140.79 | GB4 | P = 0.17 |
The first column is the THC ID, the second column represents the position of the marker within the THC sequence, the third contains the RHDB ID (http://corba.ebi.ac.uk/RHdb ) for the marker, the fourth contains the chromosome associated with the marker, the fifth is the location of the marker on the chromosome expressed in CentiRays (CR), the sixth is the radiation hybrid panel on which the marker was mapped and the final column is the score associated with the marker position (F for G3 means that this is a ‘framework’ marker). It should be noted that the G3 and GB4 panels were constructed using different radiation dosages. Consequently, the ‘size’ of the chromosome in CR is different. Single lines separate distinct THCs; of the THCs shown, only the last, THC404053, has a discrepancy in its map location.