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. 2024 Apr 8;52(8):4483–4501. doi: 10.1093/nar/gkae240

Table 1.

Common CPA factors identified in the screens for the PAS of CPEB2 and CCND2 genes

CPEB2 PAS CCND2 PAS
# Complexes Genes P adj P adj PAS binding*
1 CPSF WDR33** 6.24E-162 1.22E-69 +
2 CPSF1 1.09E-102 2.50E-15 +
3 CPSF2 1.37E-12 1.76E-10 +
4 CPSF3 3.23E-07 0.0145424 +
5 CPSF4 8.38E-100 4.61E-36 +
6 FIP1L1 5.92E-08 0.0007598 +
7 CSTF CSTF1 2.27E-19 5.93E-05 +
8 CSTF3 1.02E-08 1.04E-16 +
9 CFI NUDT21 4.87E-08 0.0042814 +
10 CPA scaffold SYMPK 1.52E-09 3.57E-05 +
11 CFII PCF11 0.06263*** 0.0010556 +
12 CTD kinase CCNK 7.11E-05 0.0001607
13 CDK12 0.000815 0.0001589

*Affinity purification and mass spectrometry results from Shi et al. (17).

**The highest confidence enrichment in the two screens.

***Padj <0.25, but >0.05.

+: Binding to RNA containing a canonical PAS with the AAUAAA hexamer. −: No PAS binding was observed.