Table 1.
CPEB2 PAS | CCND2 PAS | ||||
---|---|---|---|---|---|
# | Complexes | Genes | P adj | P adj | PAS binding* |
1 | CPSF | WDR33** | 6.24E-162 | 1.22E-69 | + |
2 | CPSF1 | 1.09E-102 | 2.50E-15 | + | |
3 | CPSF2 | 1.37E-12 | 1.76E-10 | + | |
4 | CPSF3 | 3.23E-07 | 0.0145424 | + | |
5 | CPSF4 | 8.38E-100 | 4.61E-36 | + | |
6 | FIP1L1 | 5.92E-08 | 0.0007598 | + | |
7 | CSTF | CSTF1 | 2.27E-19 | 5.93E-05 | + |
8 | CSTF3 | 1.02E-08 | 1.04E-16 | + | |
9 | CFI | NUDT21 | 4.87E-08 | 0.0042814 | + |
10 | CPA scaffold | SYMPK | 1.52E-09 | 3.57E-05 | + |
11 | CFII | PCF11 | 0.06263*** | 0.0010556 | + |
12 | CTD kinase | CCNK | 7.11E-05 | 0.0001607 | − |
13 | CDK12 | 0.000815 | 0.0001589 | − |
*Affinity purification and mass spectrometry results from Shi et al. (17).
**The highest confidence enrichment in the two screens.
***Padj <0.25, but >0.05.
+: Binding to RNA containing a canonical PAS with the AAUAAA hexamer. −: No PAS binding was observed.