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. 2024 Apr 23;67(9):7158–7175. doi: 10.1021/acs.jmedchem.4c00021

Table 2. X-ray Collection and Refinement Statistics for the Four Enzyme Inhibitor Complexes.

  humanHGPRT·1 TBrHGPRT1·4 humanHGPRT·5 TBrHGPRT1·5
Crystal parameters
wavelength 0.95373 0.95373 0.95373 0.95373
space group P 21 21 21 P 42 21 2 P 21 P 21
unit cell length, abc(Å) 74.46, 93.42, 129.32 93.03, 93.03, 105.70 55.64, 129.59, 64.33 56.86, 88.28, 94.31
unit cell angle, α, β, γ (°) 90, 90, 90 90, 90, 90 90, 103.80, 90 90, 106.05, 90
Diffraction data
temperature (K) 100 100 100 100
resolution rangea (Å) 75.73–2.50 (2.59–2.50) 41.2–2.20 (2.25–2.20) 43.98–2.27 (2.41–2.27) 45.97–2.46 (2.55–2.46)
total reflections 73,412 (6943) 84,604 (5885) 129,885 (7590) 93,048 (7589)
unique reflections 31,919 (3156) 24,294 (1690) 43295 (2811) 37,219 (3162)
multiplicity 2.3 (2.2) 3.5 (2.5) 3.0 (2.7) 2.5 (2.4)
completeness (%) 99.90 (99.97) 99.96 (100) 98.97 (96.3) 97.22 (95.02)
mean I/σ(I) 7.32 (2.16) 19.31 (3.75) 9.41 (1.52) 6.57 (3.34)
Wilson B-factor (Å2) 37.40 27.77 28.01 27.49
R-pim 0.0448 (0.396) 0.019 (0.111) 0.040 (0.437) 0.091 (0.254)
CC1/2 0.997 (0.777) 0.998 (0.97) 0.997 (0.525) 0.989 (0.851)
Refinement
reflections used in refinement 31887 (3146) 24173 (1670) 42442 (2791) 31799 (2550)
Rwork 0.200 (0.244) 0.163 (0.190) 0.358 (0.387) 0.229 (0.313)
Rfree 0.260 (0.339) 0.217 (0.253) 0.223 (0.289) 0.287 (0.367)
RMS (bonds Å) 0.006 0.012 0.004 0.006
RMS (°) 1.05 1.17 1.04 0.87
Ramachandran favored (%) 94.61 94.44 97.41 93.18
Ramachandran outliers (%) 0.66 0.29 0.12 0.29
clashscoreb 11.3 5.30 6.56 8.92
Components of the asymmetric unit
subunits 4 2 4 4
inhibitors 4 2 4 4
magnesium ions 3 2 8 0
water molecules 111 280 170 375
a

The values in parentheses are for the outer resolution shell.

b

A clash is defined as an atomic overlap of 0.4 A (Angstroms). The clash score is (1000x number of overlaps)/number of atoms in the structure.