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. 2024 May 13;24:393. doi: 10.1186/s12870-024-05087-4

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© The Author(s) 2024

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 4 — Numbers of DETs at log2fold change (L2FC) of ≥ ± 2; 4-fold differential expression, p-value cutoff for FDR < 0.001. The VENN diagram shows DETs detected at (A) 24, (B) 72 and (C) 120 h after infiltration. Up- and downregulated transcripts in control-infiltrated samples and SAP11_CaPm infiltrated samples were analyzed using jvenn [37]. (D) The barplot summarizes for each time point the total number of up- (green) and downregulated (blue) transcripts upon control- infiltration in comparison to non -infiltration and up- (red) or downregulated (yellow) transcripts due to infiltration with SAP11_CaPm in comparison to control-infiltration