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[Preprint]. 2024 Apr 30:2024.04.29.591661. [Version 1] doi: 10.1101/2024.04.29.591661

Extended Data Table 1:

Cryo-EM data collection, refinement and validation statistics

V337M case3 R406W case2 in vitro
Data collection
Microscope Titan Krios Titan Krios Titan Krios
Voltage (kV) 300 300 300
Detector Falcon4 Falcon4 Falcon4i
Magnification 96,000 96,000
Electron exposure (e-/Å2) 40 40 40
Defocus range (μm) −1.0 to −2.0 −1.0 to −2.0 −1.0 to −2.0
Pixel size (Å) 0.824 0.824 0.727
Data processing PHF SF TF PHF CTE Type I PHF
Box size (pixel) 400 400 400 400 400 384
Symmetry imposed C1 C1 C3 C1 C1 C1
Initial particle images (no) 510,657 144,450 124,071
Final particle images (no) 330,371 75,617 104,579 134,218 10,232 37,720
Map resolution (Å) FSC threshold 0.143 2.8 3.3 2.3 3.0 5.0 2.8
Helical rise (Å) 2.37 4.76 4.76 2.37 2.37 2.37
Helical twist (°) 179.4 −1.07 −0.88 179.4 179.4 179.2
Refinement
Model resolution (Å) FSC threshold 0.5 2.9 3.5 2.5 3.2 5.0 2.9
Map sharpening B factor (Å2) −56 −83 −43 −70 −42
 Model composition
 Non-hydrogen atoms 4116 4704 3528 3522 3414
 Protein residues 539 616 462 462 444
 Ligands 0 0 0 0 0
B factors (A2)
 Protein 208.8 276.3 200.3 237.2 180.2
R.m.s. deviations
 Bond lengths (Å) 0.0063 0.0063 0.0063 0.0069 0.0067
 Bond angles (°) 1.390 1.347 1.393 1.485 1.305
Validation
 MolProbity score 1.93 2.37 2.28 2.18 1.75
 Clashscore 6.58 5.86 5.58 4.89 4.31
 Poor rotamers (%) 1.49 5.97 4.48 4.48 0
Ramachandran plot
 Favored (%) 93.33 92.67 92.00 93.33 90.28
 Allowed (%) 6.67 7.33 8.00 6.67 9.72
 Disallowed (%) 0 0 0 0 0
EMDB EMD-19846 EMD-19849 EMD-19852 EMD-19854 EMD-19855
PDB 9EO7 9EO9 9EOE 9EOG 9EOH