Table 1.
Campylobacter genomes selected for analysis of antimicrobial resistance genes and point mutations
| Characteristic | C. jejuni (N = 97)a | C. coli (N = 67) | ||||
|---|---|---|---|---|---|---|
| CIP resistant AZM resistant (n = 12) | CIP resistant AZM susceptible (n = 56) | CIP susceptible AZM susceptible (n = 28) | CIP resistant AZM resistant (n = 28) | CIP resistant AZM susceptible (n = 24) | CIP susceptible AZM susceptible (n = 15) | |
| Sex (n) | ||||||
| Female | 6 | 32 | 13 | 15 | 19 | 7 |
| Male | 6 | 24 | 15 | 13 | 5 | 8 |
| Type of Sample (n) Diarrhoea | 3 | 25 | 15 | 5 | 6 | 2 |
| Asymptomatic | 9 | 31 | 13 | 23 | 18 | 13 |
| Age (months) | ||||||
| Median | 11.1 | 12.8 | 8.3 | 16.7 | 16.5 | 9.0 |
| IQR | 8.0–15.7 | 7.6–16.7 | 6.3–15.8 | 14.0–20.0 | 10.5–20.1 | 7.9–17.9 |
| Min | 3.1 | 1.0 | 2.1 | 0.4 | 4.8 | 2.6 |
| Max | 35.4 | 34.0 | 32.0 | 24.0 | 38.9 | 23.0 |
Selection for inclusion enriched to include isolates with phenotypic resistance upon antimicrobial resistance testing to the two first-line antimicrobials ciprofloxacin and azithromycin.
a
One isolate (n = 1) is classified as CIP susceptible and AZM resistant. It is from an asymptomatic faecal sample from a female participant.