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. 2024 May 16;19(5):e0302783. doi: 10.1371/journal.pone.0302783

Table 2. Gram-positive/negative bacteria quantitative real-time PCR primer sets.

Target (gene) Name Sequence (5’-3’) μM Reference
S. epidermidis (atlE gene) SEP_atlE_F GGAGGAACTAATAATAAGTTAACTG 10 [28]
SEP_atlE_R GTCATAAACAGTTGTATATAAGCC 10
SEP_atlE_P FAM-CTGCTAATCGTGGTGTTGCTCAAATTAAA-BHQ1 10
S. agalactiae (sodA gene) SAG_sip_F GTTCCAGCAGCTAAAGAGGAAG 10 [29]
SAG_sip_R CCGGTGCTACTTTAGCTACTGG 10
SAG_sip_P HEX-CACCAGCTTCTGTTGCCGCTGAAACACCAGC-BHQ1 10
S. aureus (nuc gene) SAU_nuc_F CACCTGAAACAAAGCATCCTAAA 10 [30]
SAU_nuc_R CGCTAAGCCACGTCCATATT 10
SAU_nuc_P CY5-TGGTCCTGAAGCAAGTGCATTTACGA-BHQ2 10
P. aeruginosa (gyrB gene) PAE_gyrB_F GGCGTGGGTGTGGAAGTC 10 [31]
PAE_gyrB_R TGGTGGCGATCTTGAACTTCTT 10
PAE_gyrB_P FAM-TGCAGTGGAACGACA-BHQ1 10
E. coli (16s rRNA gene) ECO_16s_F CATGCCGCGTGTATGAAGAA 10 [32]
ECO_16s_R CGGGTAACGTCAATGAGCAAA 10
ECO_16s_P CY5-TATTAACTTTACTCCCTTCCTCCCCGCTGAA-BHQ2 10