Table 2. Gram-positive/negative bacteria quantitative real-time PCR primer sets.
Target (gene) | Name | Sequence (5’-3’) | μM | Reference |
---|---|---|---|---|
S. epidermidis (atlE gene) | SEP_atlE_F | GGAGGAACTAATAATAAGTTAACTG | 10 | [28] |
SEP_atlE_R | GTCATAAACAGTTGTATATAAGCC | 10 | ||
SEP_atlE_P | FAM-CTGCTAATCGTGGTGTTGCTCAAATTAAA-BHQ1 | 10 | ||
S. agalactiae (sodA gene) | SAG_sip_F | GTTCCAGCAGCTAAAGAGGAAG | 10 | [29] |
SAG_sip_R | CCGGTGCTACTTTAGCTACTGG | 10 | ||
SAG_sip_P | HEX-CACCAGCTTCTGTTGCCGCTGAAACACCAGC-BHQ1 | 10 | ||
S. aureus (nuc gene) | SAU_nuc_F | CACCTGAAACAAAGCATCCTAAA | 10 | [30] |
SAU_nuc_R | CGCTAAGCCACGTCCATATT | 10 | ||
SAU_nuc_P | CY5-TGGTCCTGAAGCAAGTGCATTTACGA-BHQ2 | 10 | ||
P. aeruginosa (gyrB gene) | PAE_gyrB_F | GGCGTGGGTGTGGAAGTC | 10 | [31] |
PAE_gyrB_R | TGGTGGCGATCTTGAACTTCTT | 10 | ||
PAE_gyrB_P | FAM-TGCAGTGGAACGACA-BHQ1 | 10 | ||
E. coli (16s rRNA gene) | ECO_16s_F | CATGCCGCGTGTATGAAGAA | 10 | [32] |
ECO_16s_R | CGGGTAACGTCAATGAGCAAA | 10 | ||
ECO_16s_P | CY5-TATTAACTTTACTCCCTTCCTCCCCGCTGAA-BHQ2 | 10 |