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. 2024 May 3;23:2011–2033. doi: 10.1016/j.csbj.2024.04.060

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© 2024 The Authors

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

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Fig. 3 — (A-C) Graph-based visualization of sequence assembly of Escherichia coli str. K-12 substrate MG1655 with (A) Bandage, (B) GFAviz, and (C) AbyssExplorer (NCBI:txid511145). (D) Heatmap visualizing the bin abundances of draft genomes using MetaWrap (Bioproject Accession: PRJEB2054, ID: 203783). (E) Binning of MAGs highlighting 214 bins of E.coli using BinaRena (BioProject: PRJNA382010). (F) CGView: Genome Contigs Viewer of Escherichia coli PA2 (NCBI RefSeq assembly GCF_000335355.2) in a circular format. (G-H) Scaffold visualization of E.coli K-12 with (G) IMG and (H) UCSC genome viewers. (I) Example of a pangenome graph.