Table 2.
Top 5 clusters and their constituent candidate sequences in terms of total count obtained by AptaSUITE software27.
| Cluster 1 sequences (5′–3′) | Cluster size |
|---|---|
| > Aptamer_301794 | 19 |
| AGGCCAACTGGATAGCGAATAGAACTCTGCCGTGGGGTGCAGTTTTAATTGTACGTTCTCGAATTCAGCACTACCTTTTGGCAAACGCTAATAAGGG | |
| > Aptamer_1403717 | 2 |
| GGGCCAACTGGATAGCGAATAGAACTCTGCCGTGGGGTGCAGTTTTAATTGTACGTTCTCGAATTCAGCACTACCTTTTGGCAAACGCTAATAAGGG | |
| > Aptamer_2065068 | 1 |
| AGGCCAACTGGATAGCGAATAGAACTCTGCCGTGGGGTGCAGTTTTAATTGTACGCTCTCGAATTCAGCACTACCTTTTGGCAAACGCTAATAAGGG | |
| > Aptamer_458952 | 1 |
| GGGCCAACTGGATCGCGAATAGAACTCTGCCGTGGGGTGCAGTTTTAATTGTACGTTCTCGAATTCAGCATTACCTTTTGGCAAACGCTAATAAGGG | |
| > Aptamer_487442 | 1 |
| AGGCCAACTGGATCGCGAATAGAACTCTGCCGTGGGGTGCAGTTTTAATTGTACGTTCTCGAATTCAGCACTACCTTTTGGCAAACGCTAATAAGGG | |
| Cluster 2 sequences (5′–3′) | |
| > Aptamer_207452 | 16 |
| AGGCCAACTGGATAGCGAATGTGGCAGTCGGTTTTGACTTGCGCTCTTGCATCATTATTCGAATTCAGCACTACCTTTTGGCAAACGCTAATAAGGG | |
| > Aptamer_304945 | 1 |
| GGGCCAACCGGATAGCGAATGTGGCAGTCGGTTTTGACTTGCGCTCTTGCATCATTATTCGAATTCAGCACTACCTTTTGGCAAACGCTAATAAGGG | |
| > Aptamer_1441463 | 1 |
| AGGCCAACTGGATAGCGAATGTGGCAGTCGGTTTTGACTTGCGCTCTTGCATCAATATTCGAAATCAGCACTACCTTTTGGCAAACGCTAATAAGGG | |
| > Aptamer_144392 | 1 |
| AGGCCAACTGGATAGCGAATGTGGCAGTCGGTTTTGACTTGCGCTCTTGCATCATTATTCGAATTCAGCAATACCTTTTGGCAAACGCTAATAAGGG | |
| > Aptamer_264813 | 1 |
| AGGCCAACTGGATAGCGAATGTGGCAGTCGGTTTTGACTTGCGCTCTTGCATCATTATTCGAATACAGCACTACCTTTTGGCAAACGCTAATAAGGG | |
| Cluster 3 sequences (5′–3′) | |
| > Aptamer_546515 | 6 |
| AGGCCAACTGGATAGCGAAGTGGGAGAGGAGTGGGGGGTATGGTGCATAAAGTCTGTTGCGAATTCAGCACTACCTTTTGGCAAACGCTAATAAGGG | |
| > Aptamer_111056 | 2 |
| AGGCCAACTGGATAGCGAAGTGGGAGAGGAGTGGGGGGTATGGTGCATAAAGTCTGTTGCGAATTCAGCACTACCTTTTGGCAAACGCTAATAAGGA | |
| > Aptamer_947713 | 1 |
| GGGCCAACTGGATAGCGAAGTGGGAGAGGAGTGGGGGGTATGGTGCATAAAGTCTGTTGCGAATTCAGCACTACCTTTTGGCAAACGCTAATAAGGG | |
| Cluster 4 sequences (5′–3′) | |
| > Aptamer_423283 | 9 |
| AGGCCAACTGGATAGCGAATGTTAGTGGACTCGGTTTGGACGTTCTCTCTTCTCGAATGCGAATTCAGCACTACCTTTTGGCAAACGCTAATAAGGG | |
| Cluster 5 sequences (5′–3′) | |
| > Aptamer_253457 | 7 |
| AGGCCAACTGGATAGCGAATTTGCAATCAGCGTGGGTGGGTTTCTTTTGCGTGGTGTGTCGAATTCAGCACTACCTTTTGGCAAACGCTAATAAGGG | |
| > Aptamer_2556277 | 1 |
| AGGCCAACTGGATAGCGAATTTGCAATCAGCGTGGGTGGGTTTCTTTTGCGTGGTGGGTCGAATTCAGCACTACCTTTTGGCAAACGCTAATAAGGG |
The underlined sections represent the fixed primer regions. Nucleotide variations between sequences in the same cluster are highlighted in bold.