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. Author manuscript; available in PMC: 2024 May 20.
Published in final edited form as: Curr Opin Struct Biol. 2023 May 28;81:102614. doi: 10.1016/j.sbi.2023.102614

Table 1.

Comparison of combinations of Expansion Microscopy with different SRM methods.

Effective lateral resolutionb deff Maximum Effective imaging depthc Photodamage Probe
x4 expansiona +Epifluorescence/Confocal  ~70 nm 15 μm  Medium Conventional fluorophores
x4 expansion + Light Sheet/Lattice Light Sheet  ~70 nm 15 μm  Low Conventional fluorophores
x4 expansion + SIM  25–40 nm <4 μm  Medium Conventional fluorophores
x4 expansion + Airyscan  30–40 nm 15 μm  Medium Conventional fluorophores
x4 expansion + SOFI/SRRF  15–30 nm <2 μm higher when using light sheet  Medium Fluctuating fluorophores
x4 expansion + STED  ~10 nm 15 μm  High High-depletability fluorophores
x4 expansion + PALM/STORM/SMLM  5–10 nm <2 μm higher when using light sheet  Medium Photoactivatable fluorophores
a

The x4 expansion refers to samples that have been expanded by a factor of 4.0. The effective resolution is calculated with a 4.0 length expansion factor (Equation (1)).

b

The maximum effective lateral resolution is calculated as the maximum lateral resolution of the microscope divided by the length expansion factor of the gel sample.

c

The maximum effective imaging depth is the maximum imaging depth of the microscope divided by the length expansion factor.