Figure 5.
(A) Boxplots of the scaled positional root-mean-square deviation (RMSD100)55 between the backbone of conformations sampled during the last 5 ns of simulation and the corresponding starting conformation for a given parameter set. Note that the RMSD was not scaled for the three proteins that contained fewer than 40 residues (see the text). (B) The data in (A) after a Box-Cox transformation was performed.