Table 1. Structure statistics for the 10 final refined structures of [d(CGC)r(aaa)d(TTTGCG)]2.
NOE restraints | 530 | ||
intranucleotidea | 288 | ||
sequentiala | 146 | ||
cross-strand | 6 | ||
involving exchangeable protonsb | 90 | ||
Torsion angle restraintsc | 208 | ||
Hydrogen bond restraints | 30 | ||
Relaxation matrix refinement | |||
number of peak integrals used at each mixing timed | 248 | ||
average R1/6 factor | 0.0266 ± 0.0003 | ||
Refinement statistics (10 final lowest-energy structures) | |||
NOE violation >0.5 Å | <2 | ||
dihedral angle violation >5° | 0 | ||
average pairwise r.m.s.d. | |||
all heavy atom | 1.25 ± 0.36 | ||
without 5′ and 3′ terminus | 0.81 ± 0.26 | ||
hybrid segmente | 0.43 ± 0.08 | ||
average r.m.s.d. from ideal covalent geometry | |||
bond lengths (Å) | 0.0085 ± 0.0001 | ||
bond angles (˚) | 3.31 ± 0.12 | ||
impropers (˚) | 0.34 ± 0.01 |
aThe NOE restraints were for the two degenerate strands.
bTwenty-two imino proton to non-exchangeable proton NOEs, 20 amino proton to exchangeable proton NOEs, 18 imino and amino proton NOEs, and 30 C2′-hydroxyl proton to non-exchangeable proton NOEs.
cSee Materials and Methods.
dCross-peak volumes were measured in three NOESY spectra with mixing times of 60, 120 and 240 ms. Number of peaks were for the two degenerate strands.
eHybrid segment is defined as 4a to 6T, i.e. [r(aaa)d(TTT)]2.