| Target | PCR system | Primers and probes | Oligo sequence | Refs. |
|---|---|---|---|---|
| All bacteria | TaqMan | Forward | CGGTGAATACGTTCCCGG | 55,56 |
| Reverse | TACGGCTACCTTGTTACGACTT | |||
| Probe | 6 FAM-CTT GTA CAC ACC GCC CGT C-MGB | |||
| B. intestinalis | SYBR Green | Forward | AGCATGACCTAGCAATAGGTTG | 57 |
| Reverse | ACGCATCCCCATCGATTAT | |||
| B. uniformis | SYBR Green | Forward | TCTTCCGCATGGTAGAACTATTA | 58 |
| Reverse | ACCGTGTCTCAGTTCCAATGTG | |||
| B. fragilis | SYBR Green | Forward | TGATTCCGCATGGTTTCATT | 57 |
| Reverse | CGACCCATAGAGCCTTCATC |
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