. 2016 Feb 15;73(16):3205–3215. doi: 10.1007/s00018-016-2159-4

Table 1.

TAF1 probes, genomic locations and sequences

Experiment	Probe	Transcript/s	Loc	Sequence
qPCR analysis	TAF1_SYBR_Forward	NM_001286074	Exon 32	AGAGTCGGGAGAGCTTTCTG
	TAF1_SYBR_Forward	NM_004606	Exon 32	AGAGTCGGGAGAGCTTTCTG
	TAF1_SYBR_Reverse	NM_138923	Exon 33	CACAATCTCCTGGGCAGTCT
Microarray	A_23_P11237	NM_001286074	Exon 38	GCATGCTTCAGGAGAACACAAGGATGGACATGGAAAATGAAGAAAGCATGATGTCCTATG
		NM_004606	Exon 37
		NM_138923	Exon 37
Microarray	A_32_P192615	NM_001286074	Exon 39 (UTR)	GGCTGAGATGAGACTGAAAGATGGGCAGGAAGTATATCATCACAAGCTTTGTGTTTGATG
Microarray	A_32_P192615	NM_138923	Exon 38 (UTR)
Microarray	A_33_P3353111^a	ENST00000373775 (nonsense mediated decay)	Exon 15 (UTR)	TCTTTGTGACTGGTTACTTCATCCAGGGGACCAATTTCTCTCTGGAATATTAGTCCCGCA
Microarray	A_33_P3353111^a	ENST00000462588 (untranslated)	Exon 11

NM_001286074, NM_004606, and NM_138923 are the three full-length and most abundant transcripts of TAF1

^aTwo examples of alternatively spliced untranslated transcripts interrogated by A_33_P3353111 are given; this probe was eventually filtered out of the analysis due to low expression