Table 1.
Study | Site | Design | Type of sample | NGS sequencing | Region | n0 | n1 | n2 |
---|---|---|---|---|---|---|---|---|
Park et al. (8) | Oral | Case-control | Oropharyngeal swab | 454 pyrosequencing | V1-V3 | 12 | 17 | – |
Wu et al. (9) | Oral | Case-control | Periodontal plaque | Illumina | V4-V5 | 25 | 25 | – |
Wang et al. (10) | Airway | Case-control | Sputum | Illumina | V4 | 16 | 43 | – |
Haldar et al. (11) | Airway | Case-control | Sputum | Illumina | V4 | 73 | 60 | – |
Wang et al. (12) | Airway | Case-control | Sputum | Illumina | V3-V4 | 10 | 4 | 36 |
Wang et al. (13) | Airway | Case-control | Sputum | PacBio/Illumina | V1-V9 | 27 | 98 | – |
Mahomed et al. (14) | Airway | Case-control | Sputum | Illumina | V1-V3 | – | 18 | 6 |
Dang et al. (15) | Airway | Case-control | Sputum | NovaSeq-PE250 | V3-V4 | 19 | 51 | – |
Su et al. (16) | Airway | Case-control | Sputum | Illumina | V3-V4 | 10 | 23 | 28 |
Zhu et al. (17) | Airway | Case-control | Sputum | Illumina | V3-V4 | 36 | – | 34 |
Millares et al. (18) | Airway | Cross-sectional | Sputum | 454 pyrosequencing | V1-V3 | - | 8 | 8 |
Feigelman et al. (19) | Airway | Case-control | Sputum | Illumina | NR | 4 | 4 | – |
Erb-Downward et al. (20) | Airway | Case-control | BALF | 454 pyrosequencing | V1-V3 | 10 | 4 | – |
Pragman et al. (21) | Airway | Case-control | BALF | 454 pyrosequencing | V3 | 10 | 22 | – |
Einarsson et al. (22) | Airway | Case-control | BALF | Illumina | V1-V2 | 11 | 18 | – |
Mika et al. (23) | Airway | Cross-sectional | BALF | 454 pyrosequencing | V3-V5 | 10 | 32 | – |
Gupta et al. (24) | Airway | Case-control | BALF | Illumina | V3-V4 | - | 14 | 13 |
Kim et al. (25) | Airway | Case-control | lung tissue | 454 pyrosequencing | NR | 13 | 13 | – |
Wu et al. (26) | Intestine | Case-control | Fecal | Illumina | V3-V4 | 22 | 29 | 29 |
Bowerman et al. (27) | Intestine | Case-control | Fecal | 16S rRNA gene sequencing | NR | 29 | 28 | – |
NR, not reported; n0, Healthy; n1, SCOPD; n2, AECOPD; “-”, none.