Table 1.
Feature comparison of different datasets
| Data set | Data set code | Aligned length (bp) | Variable sites | PI sites | Haplotypes | ||
|---|---|---|---|---|---|---|---|
| Number | % | Number | % | ||||
| Plastome | A | 138,552 | 7,501 | 5.41 | 4,811 | 3.47 | 75 |
| Coding region | B | 76,307 | 2,903 | 3.80 | 1,815 | 2.38 | 70 |
| Combined four most variable markers | C | 6,511 | 629 | 9.66 | 433 | 6.65 | 63 |
| ycf1 (SSC portion) | D | 4,359 | 513 | 11.77 | 291 | 6.68 | 63 |
| matK + rbcL + trnH-psbA | E | 3,615 | 225 | 6.22 | 148 | 4.09 | 48 |
| nrDNA | F | 6,773 | 368 | 5.43 | 297 | 4.39 | 68 |
| ITS | G | 734 | 159 | 21.66 | 131 | 17.85 | 58 |
| Plastome + nrDNA | H | 145,325 | 7,869 | 5.41 | 5,108 | 3.51 | 80 |
Note: PI: Parsimony informative sites