Table 2. Presence of unique orthologous protein clusters among the Brazilian (n = 10) and non-Brazilian (n = 18) genomes in comparison to Salmonella Infantis reference strain SINFA LN649235.1.
| Salmonella Infantis genomes | Biological processes | Cellular components | Molecular function |
|---|---|---|---|
| Brazilian genomes (n = 10) | Cellular response to DNA damage stimulus, cellular response to manganese ion, DNA-templated regulation of transcription, leucine biosynthetic process, nicotinamide riboside transport, oxidation–reduction process, pathogenesis, protein transport, regulation of ATPase activity, regulation of translation, response to antibiotic, response to toxic substances, SOS response, transcriptional attenuation by ribosome, translation, tryptophan biosynthetic process, valine biosynthetic process, viral genome integration into host DNA | Cytoplasm | DNA binding, translation elongation factor activity |
| sSNP non-Brazilian genomes (n = 8) | Cellular response to DNA damage stimulus, cellular response to manganese ion, DNA-templated regulation of transcription, leucine biosynthetic process, oxidation–reduction process, pathogenesis, protein transport, regulation of ATPase activity, regulation of translation, response to antibiotic, response to toxic substances, SOS response, transcriptional attenuation by ribosome, translation, tryptophan biosynthetic process, valine biosynthetic process | Cytoplasm | DNA binding |
| dSNP non-Brazilian genomes (n = 8) | Cellular response to DNA damage stimulus, DNA-mediated transposition DNA-templated regulation of transcription, leucine biosynthetic process, oxidation–reduction process, pathogenesis, protein transport, regulation of ATPase activity, regulation of translation, rescue of stalled ribosome, response to toxic substance, SOS response, translation | – | DNA binding |
| pESI non-Brazilian genomes (n = 2) | Amino acid transport, cellular response to DNA damage stimulus, cytochrome complex assembly, DNA repair, DNA replication, DNA-templated regulation of transcription, oxidation–reduction process, pathogenesis, pillus organization, plasmid maintenance, plasmid partitioning, protein secretion, protein transport, response to antibiotic, response to mercury ion, response to radiation, response to toxic substances, sodium ion transport, SOS response, translation, transmembrane transport | Integral component of membrane, periplasmic space, plasma membrane, | ATP binding, mercury ion transmembrane transporter activity, metal ion binding, oxidoreductase activity |
Notes.
- sSNP
- eight non-Brazilian Salmonella Infantis genomes of SNP clusters common to the 80 Brazilian Salmonella Infantis strains analyzed
- dSNP
- eight non-Brazilian Salmonella Infantis genomes of SNP clusters different than the 80 Brazilian Salmonella Infantis strains analyzed