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. 2011 Dec 23;69(10):1705–1715. doi: 10.1007/s00018-011-0896-y

Table 1.

Nucleotide diversity and summary statistics for the three SNAP25 gene regions we resequenced

Region Pop.a Sb θ w (×10−4) π (×10−4) Tajima’s D Fu & Li’s D* Fu & Li’s F*
Rankc Rankc Rankc p d Rankc P d Rankc p d
SNAP25 rs363039 YRI 28 19.28 0.98 30.70 >0.99 2.03 >0.99 >0.001 0.72 0.90 0.076 1.8 0.99 0.0072
CEU 24 16.53 0.98 12.37 0.90 −0.85 0.24 0.82 1.42 0.96 0.022 0.78 0.75 0.20
EAS 23 15.84 0.99 17.69 0.97 0.39 0.63 0.39 1.71 >0.99 >0.001 1.50 0.96 0.049
SNAP25 rs363016 (2059 bp) CEU 3 3.43 0.21 4.89 0.43 0.93 0.79 n.d. 0.92 0.85 n.d. 1.07 0.83 n.d.
SNAP25 rs363043 (1771 bp) CEU 3 3.98 0.28 5.71 0.53 0.95 0.80 n.d. −0.35 0.46 n.d. 0.039 0.56 n.d.

aPopulation

bNumber of segregating sites

cPercentile rank relative to the distribution of values obtained in reference windows

d p value calculated through the use of coalescent simulations