Gating strategy for Kupffer cell identification in LNPC samples isolated from C57BL/6 mice (9 weeks-old). Single cells were discriminated by plotting FSC-A against FSC-H (gate 1). Live cells were defined as DAPI negative (gate 2), while hepatic leukocytes are CD45+(gate 3). Note that in this gate liver sinusoidal endothelial cells (LSEC) can be identified as CD45− CD31+. Gate 4 is then used to get rid of lineage+cells (CD3+, CD19+, CD49+, Ly6G+). Note that the concomitant use of CD11b allows the identification of neutrophils as Lineage+CD11bhigh, while T and B cells are Lineage+CD11b−. F4-80+macrophages are then defined as CD11bint F4-80+(gate 5). Finally, plotting I-A/I-E against TIM4 (gate 6) allows the discrimination between Kupffer cells (TIM4+, I-A/I− Eint) and capsular macrophages (TIM4−, I-A/I-E+).