BACE1 functional activity towards human APP/Aβ is conserved in cnidarians but not in ctenophores or choanoflagellates. CHO 695 cells stably transfected with human APP were transiently transfected with the following cDNA expression constructs: GFP (negative control), Hydra BACE1, Mnemiopsis BACE 1/2, or Monosiga BACE 1/2. Homo BACE1 and Branchiostoma (Branch.) BACE1 constructs were used as positive controls. Conditioned media were harvested after 16 h, and the secretion of human Aβ was determined via ELISA. Data were normalized to total protein and analyzed with one-way ANOVA followed by Tukey’s post hoc test (* p < 0.05; ** p < 0.01). Data are representative of three independent transfection rounds. Homo, Branchiostoma, and Hydra BACE1 all elevated Aβ secretion (A), while Mnemiopsis and Monosiga BACE 1/2 did not (B).