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. 2024 May 15;13(5):346. doi: 10.3390/biology13050346
PCa Prostate Cancer
AA African American
EA European American
RNA Ribonucleic Acid
RNA-Seq Ribonucleic Acid Sequencing
RT-qPCR Real-Time Quantitative Polymerase Chain Reaction
PCR Polymerase Chain Reaction
IPA Ingenuity Pathway Analysis
FDR False Discover Rate
EMT Epithelial–Mesenchymal Transition
RhoA Ras Homology Family Member A
DEG Differentially Expressed Gene
VDRE Vitamin D Response Element
TCGA The Cancer Genome Atlas
PRAD Prostate Adenocarcinoma
ANLN Anillin
ECT2 Epithelial Cell Transforming 2
1α,25(OH)2D3 Calcitriol or 1,25-dihydroxyvitamin D3
PSA Prostate-Specific Antigen
UV Ultraviolet
25 hydroxyvitamin D3 Calcidiol
c-MYC Cellular Myelocytomatosis Oncogene
G0/G1 phase Growth 0/Growth 1 phase
ECM Extracellular Matrix
TME Tumor Microenvironment
AIM Ancestral Informative Marker
WA West African
NA Native American
WAA West African Ancestry
SNP Single Nucleotide Polymorphism
DNA Deoxyribonucleic Acid
CHIP Chromatin Immunoprecipitation
MALDI-TOF Matrix-Assisted Laser Desorption/Ionization Time of Flight
ATCC American Type Culture Collection
OD Optical Density
PCA Principal Component Analysis
GO Gene Ontology
cDNA Complimentary DNA
GAPDH Glyceraldehyde 3-Phosphate Dehydrogenase
GEO Gene Expression Omnibus
JUN Jun Proto-oncogene AP-1 transcription factor subunit
JUNB JunB Proto-oncogene AP-1 transcription factor subunit
EGFR Epithelial Growth Factor Receptor)
EGR Early Growth Response
FOXM1 Forkhead box protein M1
IL17A Interleukin 17A
IL1A Interleukin1A
IL1B Interleukin 1B
TNF Tumor Necrosis Factor
ARP-WASP Actin-related Protein Wiskott–Aldrich Syndrome Protein
CKAP4 Cytoskeleton-Associated Protein 4
DIAPH3 Diaphanous-Related Formin 3
FGF5 Fibroblast Growth Factor 5
ITGB6 Integrin Subunit Beta 6
PDGFC Platelet-Derived Growth Factor
TGFBR2 Transforming Growth Factor Beta Receptor 2
JAG1 Jagged Canonical Notch Ligand 1
NOTCH2 Neurogenic Locus Notch Homolog Protein 2
PDZD2 PDZ Domain Containing 2
MYO1E Myosin-1E
WDR36 WD Repeat Domain 36
STAG3 Stromal Antigen 3
NF-kB Nuclear Factor-Kappa B
IGFBP-3 Insulin-like Growth Factor Binding Protein 3
FAS Fas Cell Surface Death Receptor
Wee1 Wee1 G2 Checkpoint Kinase
G1/S phase Growth 1/Synthesis Phase
G2/M phase Growth 2/Mitosis Phase
CIN Chromosome Instability
JAG1 Jagged 1
VDR Vitamin D Receptor