Table 3.
Summary statistics of mapping in silico simulated enrichments with CryptoCap_100k baits of 150 bp fastq pairedreads for each of the twelve genomes assuming two input fragment size classes (200 bp and 520 bp). These mappings were only against each of the corresponding genomes.
| Species Information | Fragment Size | # Simulated paired-reads | Mean read depth | Breadth of coverage | |
|---|---|---|---|---|---|
| Species included in design | C. parvum IOWA II | ~200 bp | 255,486 | 8.42 | 99.1% |
| ~520 bp | 255,332 | 8.42 | 99.6% | ||
| C. parvum IOWA ATCC | ~200 bp | 256,947 | 8.45 | 99.4% | |
| ~520 bp | 256,947 | 8.45 | 99.9% | ||
| C. hominis UdeA01 | ~200 bp | 256,179 | 8.50 | 99.4% | |
| ~520 bp | 255,634 | 8.48 | 99.8% | ||
| C. hominis 30976 | ~200 bp | 257,208 | 8.52 | 99.6% | |
| ~520 bp | 257,102 | 8.51 | 99.9% | ||
| C. cuniculus UKCU2 | ~200 bp | 174,845 | 5.71 | 74.7% | |
| ~520 bp | 185,561 | 6.07 | 74.5% | ||
| C. tyzzeri UGA55 | ~200 bp | 249,737 | 8.31 | 98.4% | |
| ~520 bp | 248,498 | 8.27 | 98.9% | ||
| C. meleagridis | ~200 bp | 241,764 | 8.07 | 98.5% | |
| ~520 bp | 241,770 | 8.08 | 99.9% | ||
| C. viatorum ABER_CVIA_1.0 | ~200 bp | 243,998 | 7.92 | 83.7% | |
| ~520 bp | 243,985 | 7.92 | 97.4% | ||
| Species not included in design | C. andersoni 30847 | ~200 bp | 209,400 | 7.37 | 1.4% |
| ~520 bp | 214,247 | 7.53 | 3.3% | ||
| C. baileyi TAMU-09Q1 | ~200 bp | 199,404 | 7.10 | 7.0% | |
| ~520 bp | 200,042 | 7.12 | 15.3% | ||
| C. muris RN66 | ~200 bp | 198,254 | 6.39 | 1.8% | |
| ~520 bp | 197,720 | 6.49 | 3.7% | ||
| C. ubiquitum 39726 | ~200 bp | 198,484 | 6.65 | 42.6% | |
| ~520 bp | 198,485 | 6.65 | 69.0% | ||