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. 2024 May 8;13(10):1455. doi: 10.3390/foods13101455

Table 7.

Binding energy interaction between the identified compounds and bacterial protein targets.

S/no Compounds Pubchem CID 1JII 1G27 3LPX
Binding Energy (kcal/mol) Number of Bond Interactions Binding Energy (kcal/mol) Number of Bond Interactions Binding Energy (kcal/mol) Number of Bond Interactions
1 β-resorcylic acid 1491 −6.7 H: 1, π-H: 1
Unfavourable Acceptor: 1
−5.8 H: 3, π-π Stacked: 1, π-Sigma/Alkyl: 1/1 −5.9 H: 3, π-π T-Shaped: 1, Unfavourable Donor: 1
2 Caffeic acid 689043 −7.0 H: 5, π-Alkyl: 1 −6.3 H: 3, π-Sigma: 2, Unfavourable Acceptor: 1 −6.2 H: 5, π-Sulfur/Alkyl: 1/1
3 Epicatechin 72276 −8.3 H: 2, C-H: 1, Unfavourable Donor/π anion: 1 −7.8 H: 4, π-π Stacked: 1, π-Alkyl: 1, Unfavourable Acceptor: 1 −7.5 H: 4, π-Sulfur/Alkyl: 1/1
4 Ferulic acid 445858 −6.5 C-H: 2, Alkyl: 1, Amide-π: 1 −6.2 H: 5, π-Sigma: 1 −6.0 H: 3, C-H: 1, π-Sulfur/Alkyl: 1/1
5 Gallic acid 370 −7.2 H: 7, Amide π-Stacked: 1 −5.9 H: 3, π-H/Sigma: 1/1, Unfavourable Acceptor: 1 −6.1 H: 2, π-π T-Shaped: 1, π-Alkyl: 1
6 p-coumaric 637542 −6.2 H:2, C-H: 1, π-Alkyl:1 −5.9 H: 3, C-H: 1, π-Sigma: 1 −6.0 H: 2
7 Quercetin 5280343 −9.6 H: 3, π-Anion: 1, Unfavourable Donor: 2 −7.5 H: 1, C-H: 1, Π-Anion/Alkyl/Sigma: 1/2/1, π-π Stacked: 1, Unfavourable Donor: 1 −7.9 H: 4, C-H: 2, π-Sulfur/Sigma/Alkyl: 1/2/1
8 Resveratrol 445154 −8.2 H: 5, π-anion/alkyl: 2, Unfavourable Donor: 1 −6.5 H: 1, π-Anion:1, π-π-Stacked: 1, π-Sigma/Alkyl: 1/1 −7.4 H: 2, π-π T Shaped: 1, π-Sulfur/Alkyl: 1/1, Unfavourable Donor: 1
9 Rosmarinic acid 5281792 −8.0 H: 4, π-Anion: 1 −8.2 H: 7, π-π Stacked: 1, Π-Sigma/Alkyl: 1/1 −7.6 H: 6, C-H: 1, Π-Π T-Shaped: 1, Π-Alkyl: 3
10 Rutin 5280805 −9.7 H: 6, C-H: 1, π-H: 3, π-Anion/Alkyl: 1/1, Unfavourable Donor: 1 −8.3 van der Waals: 1, H: 6, Amide-π: 1, π -Alkyl: 2, Unfavourable Donor: 1 −9.0 H: 6, π-π T Shaped: 1, π-Alkyl: 2, Unfavourable Donor: 1

1JII: Tyrosyl-tRNA synthetase; IG27: Peptide deformylase; 3LPX: DNA gyrase; H: hydrogen bond; C-H: carbon-hydrogen bond; π: pi.