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. 2005 May;187(10):3302–3310. doi: 10.1128/JB.187.10.3302-3310.2005

TABLE 2.

Oxidation rates of 26DNT, 2A46DNT, and 23DNT by wild-type NDO, NDO NagAc saturation variant F350T, and NagAc saturation and DNA shuffling variant F350T/G407Sa

Substrate Product Wild-type NDO
F350T
F350T/G407S
Nitrite release rate Product formation rate Nitrite release rate Product formation rate Relative to NDO Nitrite release rate Product formation rate Relative to NDO Relative to F350T
26DNTb 3-methyl-4-nitrocatechol 0 0 0.36 ± 0.07 0.3 ± 0.1c (100%) 1.1 ± 0.3 0.8 ± 0.1c (100%) 3d
2A46DNTe 2-amino-4,6-dinitrobenzyl alcohol NA 0 NA 70 ± 20f (73%)g NA 170 ± 10f (81%)g 2
3-amino-4-methyl-5-nitrocatechol 0 0 0.032 ± 0.006 0.043 ± 0.008c (27%)g 0.12 ± 0.04 0.12 ± 0.03c (19%)g 3d
23DNTe 2,3-dintrobenzyl alcohol NA 115h (100%)i NA 36h (100%)i 0.3 NA 104h (100%)i 0.9 3
4-methyl-3-nitrocatechol 0.014 ± 0.003 NDj 0.08 ± 0.02 ND 6 0.15 ± 0.01 ND 11 2
a

Nitrite release rate was determined in nmol NO2/min/mg protein. Product percentages are shown in parentheses with the product formation rate. NA, not available.

b

Transformations of 26DNT were performed using E. coli TG1 with 0.5 mM substrate.

c

Rate determined in nmol product/min/mg protein.

d

Relative performance is average of nitrite release rate and product formation rate calculated from identical time course experiments.

e

Transformations of 2A46DNT and 23DNT were performed using E. coli JVQ2 with 0.5 mM substrate.

f

Approximate relative activity determined by comparison of slope for product peak area at 300 nm/min/incubating suspension OD 600 nm.

g

Percentages of each product generated are relative to the total product area formed, and are based on peak area (not concentration) at 300 nm.

h

Approximate relative activity determined by comparison of slope for product peak area at 260 nm/min/incubating suspension OD 600 nm.

i

Percentages of each product generated are relative to the total product area formed, and are based on peak area (not concentration) at 260 nm.

j

4-methyl-3-nitrocatechol peak not detected (ND) through HPLC.