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The table reports the values obtained by applying different FDR thresholds (0.05 and 0.01) in Perseus to the Spectronaut matrix. This strategy was applied only to the best condition (PAC-1 10 µg).
| Condition | Human | Pisum sativum | Soybean | TP | TN | FP | FN | |
|---|---|---|---|---|---|---|---|---|
| Spectronaut | FDR 0.05 | 3741 | 145 | 203 | 257 | 3685 | 56 | 91 |
| FDR 0.01 | 3741 | 145 | 203 | 196 | 3728 | 13 | 152 |
