Table 10.
List of Fluidigm SNP assays details.
| Fluidigm Assay No. | SNP-Type Assay | Trait | Target Gene or QTL |
Position | SNP (Phenotype y) | SNP (Color of Dye z) | Reference |
|---|---|---|---|---|---|---|---|
| FA1 | Bs2 | Bacterial spot resistance | Bs2 | Chr.9 | T(R):A(S) | A(R):T(G) | [9] |
| FA2 | Bs3-1 | Bacterial spot resistance | Bs3 | Chr.2 | C(R):T(S) | C(R):T(G) | [18] |
| FA3 | Bs3-2 | Bacterial spot resistance | Bs3 | Chr.2 | G(R):T(S) | G(R):T(G) | [18] |
| FA4 | CcR9 | Anthracnose resistance | CcR9 | Chr.9 | C(R):A(S) | A(R):C(G) | [74,75] |
| FA5 | CA09g12180 | Anthracnose resistance | CcR9 | Chr.9 | A(R):C(S) | A(R):C(G) | [74,75] |
| FA6 | CA09g19170 | Anthracnose resistance | CcR9 | Chr.9 | C(R):T(S) | C(R):T(G) | [74,75] |
| FA7 | Ltr4.1-40344 | Powdery mildew resistance | Ltr4.1 | Chr.4 | AAAAC(R):GAAAT(S) | AAAAC(R):GAAAT(G) | [76] |
| FA8 | Ltr4.2-56301 | Powdery mildew resistance | Ltr4.2 | Chr.4 | A(R):C(S) | A(R):C(G) | [76] |
| FA9 | Ltr4.2-585119 | Powdery mildew resistance | Ltr4.2 | Chr.4 | C(R):T(S) | C(R):T(G) | [76] |
| FA10 | M3-2 | Phytophthora root rot resistance | Phyto.5.2 | Chr.5 | T(R):C(S) | C(R):T(G) | [5,20] |
| FA11 | M3-3 | Phytophthora root rot resistance | Phyto.5.2 | Chr.5 | CAGA(R):GAGT(S) | CAGA(R):GAGT(G) | [5,20] |
| FA12 | pvr1 | Potyvirus resistance | pvr1 | Chr.4 | A(pvr1):C(pvr1+) | A(R):C(G) | [21,63] |
| FA13 | pvr2-123457 | Potyvirus resistance | pvr2 | Chr.4 | A(pvr2123457) T(pvr2not 123457) | T(R):A(G) | [21,63] |
| FA14 | pvr2(689) | Potyvirus resistance | pvr2 | Chr.4 | A(pvr2-689):C(pvr2+689) | C(R):A(G) | [21,63] |
| FA15 | Pvr4-20172-2 | Potyvirus resistance | Pvr4 | Chr.10 | C(R):G(S) | C(R):G(G) | [21,63] |
| FA16 | Cmr1-2 | CMV resistance | Cmr1 | Chr.2 | T(R):G(S) | G(R):T(G) | [23] |
| FA17 | TSW1-4 | TSWV | Tsw1 | Chr.11 | TAAACGGAC(R):CAGACGGACCAAAAAAAGGTACGGAC(S) | TAAACGGAC(R):CAGACGGACCAAAAAAAGGTACGGAC(G) | [22] |
| FA18 | L1-3K | TMV resistance | L1 | Chr.11 | C(L1):T(not L1) | C(R):T(G) | [11,77] |
| FA19 | L4 | TMV resistance | L 4 | Chr.10 | A(L4):T(not L4) | A(R):T(G) | [11,77] |
y R: resistant, S: susceptible; Z R: red (Fam dye), G: green (HEX dye).