Table 2.
Family | Genus | Species | Common Names or Subspecies/ Acronym(s) |
Genome | Host-Source, Vector, Transmission |
Geographic Distribution |
NS Pathology | Reference |
---|---|---|---|---|---|---|---|---|
(Sub)Species complex/ Acronym(s) | ||||||||
Flaviviridae | Orthoflavivirus |
Orthoflavivirus
aroaense |
Bussuquara virus/ BSQV |
ssRNA(+) |
Hs: Non-human primates, rodents, wild birds V: Mosquitoes (Culex spp.) T: With mosquito bites |
Brazil (Pará state), Panama |
Encephalitis | [110,129] |
Iguape virus/ IGUV |
ssRNA(+) |
Hs: Wild birds V: Mosquitoes (Aedes spp.) T: With mosquito bites |
Brazil (Sao Paulo state) | Encephalitis | [109,110,194] | |||
Orthoflavivirus
cacipacoreense |
Cacipacoré virus/ CPCV |
ssRNA(+) |
Hs: Wild birds (Formicarius analis) V: Mosquitoes (Culex spp.) T: With mosquito bites |
Brazil (Pará and Rondônia states), Amazon region | Encephalitis | [129] | ||
Orthoflavivirus
denguei |
Dengue virus/ DENV |
ssRNA(+) |
Hs: Non-human primates (macaques—Macaca spp.; Surilis—Presbytis spp.) V: Mosquitoes (Aedes aegypti, Aedes albopictus, Aedes scutellaris, Aedes polynesiensis; Aedes furcifer, Aedes vittatus, Aedes tailori, Aedes luteocephalus—equatorial parts of Africa) T: With mosquito bites; Human-to-human contact (breastfeeding); Congenital infection. |
Focally worldwide spread; High treat: Africa (Sudan, Egypt, Eritrea, Djibouti, Ethiopia, Kenya, Somalia, Tanzania, Mauritius, Mozambique, Seychelles, Angola, Cameroon, Burkina Faso, Côte d’Ivoire, Senegal); the Caribbean basin, Central America, South America, southeastern Asia, Oceania |
Encephalitis, meningitis, meningoencephalitis, encephalomyelitis, acute cerebellitis, polyneuritis, encephalopathy, Parkinsonian symptoms |
[79,195,196,197,198,199,200,201,202] | ||
Orthoflavivirus
flavi |
Yellow fever virus/ YFV |
ssRNA(+) |
Hs: Non-human primates V: Mosquitoes (Aedes spp., Haemagogus spp., Sabethes spp.); ticks (Amblyomma variegatum)—in Africa, extremely rare T: With mosquito bites; With tick bites. |
Endemic regions: West Africa (Benin, Burkina Faso, Cape Verde, Côte d’Ivoire, Equatorial Guinea, Gambia, Ghana, Guinea, Guinea-Bissau, Liberia, Mali, Mauritania, Niger, Nigeria, Sao Tome and Principe, Senegal, Sierra Leone, Togo); Central Africa (Angola, Burundi, Cameroon, Central African Republic, Chad, Democratic Republic of the Congo, Gabon, Rwanda); East Africa (Ethiopia, Kenya, Somalia, Sudan, Tanzania, Uganda); Panama; South America (Argentina, Bolivia, Brazil, Colombia, Ecuador, Guyana, French Guyana, Paraguay, Peru, Suriname, Trinidad and Tobago, Venezuela) |
Encephalitis, YFV vaccine-associated encephalitis, ADEM, Guillain–Barré syndrome, meningitis, meningoencephalitis | [112,113,114,115,116,117,118] |
||
Orthoflavivirus
ilheusense |
Ilhéus virus/ ILHV |
ssRNA(+) |
Hs: Wild birds V: Mosquitoes (Aedes spp., Psorophora spp.) T: With mosquito bites |
Brazil (Pará and São Paulo states, Pantanal region) | Encephalitis | [129] | ||
Rocio virus/ ROCV |
ssRNA(+) |
Hs: Rufous-collared sparrow (Zonotrichia capensis) V: Mosquitoes (Ochleratus spp., Psorofora ferox; specific antibodies: double-collared seedeater (Sporophila caerulescen); creamy-bellied thrush (Turdus amaurochalinus); equines; water buffalo (Bubalus bubalis); marsupials T: With mosquito bites |
Southeast Brazil (Sao Paulo state—endemic region); Other regions of virus circulation: Goiás state, Rio de Janeiro state, Mato Grosso do Sul state, Paraíba state, Mato Grosso state |
Encephalitis, meningoencephalitis, meningitis |
[119,133,203] | |||
Orthoflavivirus
japonicum |
Japanese encephalitis virus/ JEV |
ssRNA(+) |
Hs: Wild aquatic birds, domestic birds, domestic pigs V: Mosquitoes (Main vectors—Culex tritaeniorhynchus, Culex vishnui, Culex gelidus) T: With mosquito bites |
Focally worldwide spread; Asia–Pacific region, Southeast Asia, Australia |
Encephalitis, meningoencephalitis, meningitis | [120,204,205,206,207,208] | ||
Orthoflavivirus
louisense |
St. Louis encephalitis virus/ SLEV |
ssRNA(+) |
Hs: Sylvatic, peridomestic, and urban birds (sparrows—Passer sp.; pigeons—Columba sp.; blue jay—Cyanocitta cristata; robins—Turdus sp.) V: Mosquitoes (Culex tarsalis, Culex pipiens, Culex quinquefasciatus) T: With mosquito bites |
United States (Eastern and Central states) | Encephalitis, meningoencephalitis, meningitis | [121,122,123,124] | ||
Orthoflavivirus
murrayense |
Murray Valley encephalitis virus/ MVEV |
ssRNA(+) |
Hs: Wild animals: marsupials (kangaroos; agile wallabies—Notamacropus agilis); rabbits (Leporidae); rodents; wild birds—Galahs (Cacatuidae); water birds (rufous night heron—Nycticorax caledonicus; Pacific black duck—Anas superciliosa); domestic animals and birds V: Mosquitoes (Culex annulirostris, Culex sitiens) T: With mosquito bites |
Australia (Western Australia, Northern Territory, New South Wales, Victoria); Papua New Guinea; Indonesia; Canada (Alberta)—imported infection | Encephalitis | [125,126,127,128] | ||
Orthoflavivirus
nilense |
West Nile virus/ WNV |
ssRNA(+) |
Hs: Wild birds, domestic animals (horses, sheep), alligators, lake frog (Rana ridibunda—competent reservoir (Russia)) V: Mosquitoed (Culex spp.) T: With mosquito bites; Human-to-human transmission (organ transplantation, blood transfusion, placental route) |
Endemic region: East Africa (Uganda) Many cases: North America, Brazil, Middle East, Europe, Asia, Regions of Africa Worldwide spread |
Meningitis, encephalitis, poliomyelitis | [129,130,131,132,209,210] | ||
Kunjin virus/ KUNV |
ssRNA(+) |
Hs: Wild birds, domestic animals (horses, sheep), alligators V: Mosquitoes (Culex annulirostris) T: With mosquito bites |
Australia (tropical north regions), Oceania | Encephalitis | [133,134] | |||
Orthoflavivirus
usutuense |
Usutu virus/ USUV |
ssRNA(+) |
Hs: Wild passerine birds, insectivorous microbats (Pipistrellus sp.), equines, rodents, shrews V: Mosquitoes (Culex spp., Aedes spp., Mansonia spp., Anopheles spp.) T: With mosquito bites |
Africa (South Africa, Central African Republic, Senegal, Côte d’Ivoire, Nigeria, Uganda, Burkina Faso, Tunisia, Morocco); Europe (introductions: France, Germany, Italy, Austria, Serbia) | Encephalitis, meningoencephalitis | [135,136,137,138] | ||
Orthoflavivirus
zikaense |
Zika virus/ ZIKV |
ssRNA(+) |
Hs: Non-human primates V: Mosquitoes (Aedes spp.) T: With mosquito bites; Human-to-human transmission (organ transplantation, blood transfusion, placental route); Contact with infected fomites. |
Brazil, Central and North America | Guillain–Barré syndrome, fetal microcephaly, myelitis, meningoencephalitis | [139,140,141,211] | ||
Peribunyaviridae | Orthobunyavirus |
Orthobunyavirus
bunyamweraense |
Bunyamwera virus/ BUNV |
ssRNA(−) |
Hs: Wild waterfowls V: Mosquitoes (Aedes circumluteolus); hard ticks (Amblyomma dubitatum, Amblyomma sculptum)—presumably T: With mosquito bites; With tick bites—presumably |
Uganda, Tanzania, Mozambique, Nigeria, Guinea, South Africa (KwaZulu-Natal province), Democratic Republic of Congo, Botswana, Namibia (Caprivi region), Senegal, Ivory Cost, Cameroon, Central African Republic, Kenya, Madagascar; Argentina, Brazil (Minas Gerais (ticks)) | Encephalitis, meningitis | [144,145,146] |
Germiston virus/ GERV |
ssRNA(−) |
Hs: Wild animals (virus isolation); domestic animals (antibody detection) V: Mosquitoes (Culex theileri, Culex rubinotus) T: With mosquito bites; Direct contact with infected tissue and fomites |
Africa; South Africa region | Encephalitis, meningoencephalitis (both sporadic cases; laboratory work infection); mental confusion | [79,143,144,147] | |||
Xingu virus/ XINV |
ssRNA(−) |
Hs: Not identified V: Mosquitoes T: With mosquito bites—presumably |
South America (Brazil) | Encephalitis/meningoencephalitis (both sporadic cases) | [79,148] | |||
Orthobunyavirus
cacheense |
Cache Valley virus/ CVV |
ssRNA(−) |
Hs: Domestic ruminants (equines, cattle); deer V: Mosquitoes (Culex spp.) T: With mosquito bites |
US (Utah, North Carolina, Missouri, Wisconsin, New York) | Encephalitis, meningoencephalitis, meningitis | [149,150,151,152] | ||
Cristoli virus 1 | – | ssRNA(−) |
Hs: Not identified V: Mosquito—presumably T: With mosquito bites—presumably |
France (Île-de-France region, including Paris) | Encephalitis | [153] | ||
Orthobunyavirus
encephalitidis |
California encephalitis virus/ CEV |
ssRNA(−) |
Hs: Equines V: Mosquitoes T: With mosquito bites |
US (California) | Encephalitis | [79,212] | ||
Orthobunyavirus
guaroaense |
Guaroa virus/ GROV |
ssRNA(−) |
Hs: Mosquitoes (Anopheles (Kerteszia) neivai) V: Mosquitoes—presumably T: With mosquito bites—presumably |
Brazil, Colombia, Panama, Bolivia | Paresis | [143,169] | ||
Orthobunyavirus
ileshaense |
Ilesha virus/ ILEV |
ssRNA(−) |
Hs: – V: Mosquitoes (Anopheles gambiae) T: With mosquito bites |
Cameroon, Central African Republic, Nigeria, Senegal, Uganda; Madagascar (virus isolation from infected persons); Ghana and Niger (antibody from infected persons) | Meningoencephalitis | [144,172] | ||
Orthobunyavirus
jamestownense |
Jamestown Canyon virus/ JCV |
ssRNA(−) |
Hs: White-tailed deer (Odocoileus virginianus), moose (Alces alces), elk (Cervus elaphus), bison (Bison bison) V: Mosquitoes (Culiseta inornata, Aedes spp., Anopheles spp.) T: With mosquito bites |
US (Minnesota, Wisconsin); Canada (British Columbia, Alberta, Saskatchewan, Manitoba, Ontario, Quebec, New Brunswick, Nova Scotia) | Encephalitis, meningoencephalitis, meningitis | [79,185,186,213,214] | ||
Inkoo virus/ INKV |
ssRNA(−) |
Hs: Wild birds V: Mosquitoes (Aedes spp.) T: With mosquito bites |
Finland, Sweden, Norway, Russia | Asthenoneurologic disturbances, microfocal neurologic symptoms, encephalitis | [52,79,156,157,158,159] | |||
Orthobunyavirus
kernense |
Main Drain virus/ MDV |
ssRNA(−) |
Hs: Horses, wild birds, black-tailed jackrabbit (Lepus californicus) V: Mosquitoes (Culicidae)—occasional vector; biting midges (Ceratopogonidae, Culicoides variipennis) T: With mosquito or midge bites |
US (California) | Unspecified CNS disease | [66,143] | ||
Orthobunyavirus
keystoneense |
Keystone virus/ KEYV |
ssRNA(−) |
Hs: Squirrels, raccoons, whitetail deer (Odocoileus virginianus) V: Mosquitoes (Aedes spp.) T: With mosquito bites |
US (Florida, coastal regions of the Chesapeake Bay) | Encephalitis, meningitis | [191,215] | ||
Orthobunyavirus
khatangaense |
Snowshoe hare virus/ SSHV |
ssRNA(−) |
Hs: Hares, squirrels V: Mosquitoes (Aedes spp.) T: With mosquito bites |
US, Canada | Meningoencephalitis, encephalitis, meningitis | [79,216,217,218,219] | ||
Khatanga virus; Chatanga virus/ KHATV |
ssRNA(−) |
Hs: Wild sylvatic animals; domestic animals—presumably V: Mosquitoes (Aedes spp., Culiseta spp., Culex spp., Anopheles spp.) T: With mosquito bites |
Russia (European part, western, middle and northeastern Siberia) | Encephalitis | [79,154,155] | |||
Orthobunyavirus
lacrosseense |
La Crosse virus/ LACV |
ssRNA(−) |
Hs: Chipmunks, squirrels V: Mosquitoes (Aedes spp.) T: With mosquito bites |
US (Ohio, Wisconsin, Minnesota, Indiana, Illinois, Iowa, North Carolina, Tennessee, West Virginia, Georgia, Virginia, Kentucky, Rhode Island) | Encephalitis | [79,134,139,140] | ||
Orthobunyavirus oropoucheense | Oropouche virus/ OROV |
ssRNA(−) |
Hs: Pale-throated sloths, non-human primates V: Mosquitoes (Culex spp., Aedes spp.); biting midges (Culicoides) T: With mosquito bites |
Brazil, Panama, Peru, Trinidad and Tobago | Meningitis | [167,168,171] | ||
Orthobunyavirus shuniense | Shuni virus/ SHUV |
ssRNA(−) |
Hs: Horses, domestic cattle V: Mosquitoes (Culex theileri); Cullicoides midges T: With mosquito and midge bites |
South Africa (Gauteng province), Israel, Nigeria | Encephalitis, meningitis | [66,171] | ||
Orthobunyavirus
tahynaense |
Ťahyňa virus/ TAHV |
ssRNA(−) |
Hs: Small wild mammals V: Mosquitoes (Culex spp., Aedes spp.) T: With mosquito bites |
Central Europe; China (Xinjiang, Qinghai, Inner Mongolia) | Meningitis, meningoencephalitis, encephalomyelitis, encephalitis | [79,160,161,162,163,164,165,166] | ||
Orthobunyavirus
tensawense |
Tensaw virus/ TENV |
ssRNA(−) |
Hs: Sylvatic rodents, foxes, raccoons, dogs, cows V: Mosquitoes (Aedes vexans, Anopheles crucians, Coquillettidia perturbans, Culex salinarius, Uranotaenia sapphirina) T: With mosquito bites—presumably; Congenital infection. |
US (Alabama, Florida) | Rabies-like symptoms, encephalitis, micro-/macrocephaly |
[143,220] | ||
Orthobunyavirus umbreense | Umbre virus/ UMBV |
ssRNA(−) |
Hs: Not identified V: Mosquitoes (Culex spp.) T: With mosquito bites—presumably |
India, Australia (Queensland—Umbre-related viruses); Malaysia (Umbre-related domestic avian pathogenic virus); France—presumably | Lethal encephalitis | [174] | ||
Orthobunyavirus
wyeomyiae |
Tucunduba virus/ TUCV |
ssRNA(−) |
Hs: – V: Mosquitoes (Culex spp., Wyeomia spp., Sabethes spp., Psorophora spp., Limatus spp., Trichoprosopon spp.) T: With mosquito bites |
Brazil | Meningoencephalitis | [170] | ||
Ntwetwe virus 1 | Ntwetwe virus 1/ NTWV 1 |
ssRNA(−) |
Hs: – V: Mosquitoes (Anopheles spp.) T: – |
Uganda | Fatal encephalopathy, encephalitis | [143,173] | ||
Phenuiviridae | Phlebovirus |
Phlebovirus
riftense |
Rift Valley Fever virus/ RVFV |
ssRNA(+/−) |
Hs: Wild and domestic animals V: Mosquitoes (Culex spp.) T: With mosquito bites; Direct contact with contaminated biological fluids. |
Kenya, Tanzania, South Africa, Sudan, Egypt, Madagascar, Somalia, Mauritania, Botswana, Namibia | Meningoencephalitis, encephalitis | [139,175] |
Phlebovirus
toscanaense |
Toscana virus/ TOSV |
ssRNA(+/−) |
Hs: – V: Sandflies (Phlebotomus perniciosus, Phlebotomus perfiliewi) T: With sandfly bites |
Italy, Spain, Slovenia, Turkey, Portugal, Greece, Cyprus, Southern France, the Balkans, the Black Sea coast, Iraq, Iran, Pakistan, Afghanistan, India | Meningitis, meningoencephalitis | [176,177,178] | ||
Rhabdoviridae | Vesiculovirus |
Vesiculovirus
chandipura |
Chandipura virus/ CHPV |
ssRNA(−) |
Hs: Pigs, buffalo, cattle V: Mosquitoes (Phlebotomus spp.) T: With mosquito bites |
India, Bhutan, Nepal, Sri Lanka, Nigeria, Senegal | Encephalitis | [179] |
Sedoreoviridae | Orbivirus | Orungo virus | Orungo virus/ ORUV |
dsRNA |
Hs: – V: Mosquito (Aedes spp., Culex spp., Anopheles spp.) T: With mosquito bites |
Regions of sub-Saharan Africa | Encephalitis | [88] |
Seadornavirus | Banna virus | Banna virus/ BAV |
dsRNA |
Hs: Domestic pigs, cattle V: Mosquitoes (Culex tritaeniorhynchus, Culex pipiens pallens, Culex annulus, Culex pseudovishnui, Culex modestus, Anopheles sinensis, Aedes vagus, Aedes albopictus, Aedes vexans, Aedes dorsalis); Midges (Culicoides sp.) T: With mosquito bites |
Indonesia, China, Vietnam | Encephalitis | [180,221,222] | |
Togaviridae | Alphavirus |
Chikungunya
virus |
Chikungunya virus/ CHIKV |
ssRNA(+) |
V: Mosquitoes (Aedes spp.) T: With mosquito bites |
Africa, Southeastern Asia, Europe (imported infection), North America | Myelitis, encephalitis | [129,139,223] |
Eastern equine
encephalitis virus |
Eastern equine encephalitis virus North American/ EEEV-NA |
ssRNA(+) |
Hs: Birds, mammals V: Mosquitoes (Aedes spp., Culex spp., Anopheles spp.) T: With mosquito bites |
North America (Massachusetts, Michigan, Florida, Georgia, North Carolina), the Caribbean region | Encephalitis | [224,225,226] | ||
Madariaga virus | Madariaga virus; Eastern equine encephalitis virus South American/ MADV; EEEV-SA |
ssRNA(+) |
Hs: Birds, mammals V: Mosquitoes (Aedes spp., Culex spp., Anopheles spp.) T: With mosquito bites |
South America (Panama, Venezuela), Haiti | Encephalitis, encephalomyelitis | [181,182,183,184] | ||
Mayaro virus | Mayaro virus/ MAYV |
ssRNA(+) |
Hs: Non-human primates, migratory birds V: Mosquitoes (Haemagogus spp.—particularly Haemagogus janthinomys); Culex spp., Mansonia spp., Aedes spp., Psorophora spp., Sabethes spp. T: With mosquito bites |
Europe (Germany, France, Netherlands, Switzerland—imported infection); United states (isolated in non-human primates, migratory birds); Mexico, Trinidad and Tobago, Brazil, Surinam, French Guiana, Venezuela, Haiti, Bolivia, Peru, Ecuador, Colombia (isolated from mosquitoes) | Encephalopathy | [129,227,228] | ||
Middelburg virus | Middelburg virus/ MIDV |
ssRNA(+) |
Hs: Equines, mice, sheep V: Mosquitoes (Aedes spp.) T: With mosquito bites |
South Africa, Zimbabwe | Meningo-encephalitis | [187,188] | ||
Ross River virus | Ross River virus/ RRV |
ssRNA(+) |
Hs: Mammals, birds V: Mosquitoes (Culex spp.) T: With mosquito bites |
Australia, Papua New Guinea | Meningitis (rare cases); encephalitis (rare cases) |
[189,190] | ||
Sindbis virus | Sindbis virus/ SINV |
ssRNA(+) |
Hs: Wild birds (Corvus corone sardonius—hooded crow); rodents; domestic animals V: Mosquitoes (Culex spp., Anopheles spp., Coquillettidia spp., Aedes spp., Ocheleratus spp.); Gamasidae ticks (Ornithonyssus bacoti), Ixodidae ticks (Hyalomma marginatum) T: With arthropod-vector bites |
Africa (endemic regions—Egypt, South Africa, Uganda, Central African Republic, Sudan, Nigeria, and Zimbabwe), Europe (Germany, Sweden, Finland, Italy, Slovakia), Russia, the Middle East, the Philippines, Turkey, Azerbaijan, Israel, India, China, Malaysia, Australia (north regions), New Zealand | Meningitis—presumably | [66,79,192,229,230] | ||
Tonate virus | Tonate virus; Venezuelan equine encephalitis virus IIIB/ TONV; VEEV-IIIB |
ssRNA(+) |
Hs: Wild birds (Psarocolius decumanus—crested oropendola) V: Mosquitoes (Culex portesi) T: With mosquito bites |
North America, South America (Surinam, French Guiana), Central America | Encephalitis | [192,193] | ||
Venezuelan equine
encephalitis virus |
Venezuelan equine encephalitis virus/ VEEV |
ssRNA(+) |
Hs: Wild rodents (cotton mouse—Peromyscus gossypinus; hispid cotton rat—Sigmodon hispidus; spiny rats—Proechimys spp.; Oryzomys spp., Zigodontomys spp., Heteromys spp.), equines, canids, pigs, wild birds, bats V: Mosquitoes (Culex spp., Mansonia spp., Anopheles spp., Aedes spp., Psorophora spp., Sabethes spp., Haemagogus spp., Deinocerites spp.); Ochlerotatus taeniorhynchus T: With mosquito bites |
Costa Rica, Venezuela, Colombia, Belize, Peru, Ecuador, British Guyana, Guatemala, Argentina, Panama, Trinidad, Honduras, El Salvador, Nicaragua, Mexico; United States (Texas, Florida) | Encephalitis, meningitis | [15,52,66,192,231,232,233] | ||
Western equine
encephalitis virus |
Western equine encephalitis virus/ WEEV |
ssRNA(+) |
Hs: Wild birds (passerine); wild rodents, horses V: Mosquitoes (Culex tarsalis; Aedes spp.); Ochlerotatus melanimon (California), Aedes dorsalis (Utah, New Mexico), Aedes campestris (New Mexico) T: With mosquito bites |
Brazil, Colombia, United States | Encephalitis, meningitis, encephalomyelitis |
[15,129,233,234] |
Taxonomic and trivial names are given according to the reports of the International Committee on Taxonomy of Viruses (ICTV) https://ictv.global/msl and https://ictv.global/vmr (versions from 2022/2023); 1 Commonly accepted alternative names not given in the reports of the International Committee on Taxonomy of Viruses (ICTV) (see above).