Table 2.

Number of proteins, PPIs, and novel predictions for different combinations of PrePPI FPRs and ZEPPI-scores for E. coli

PrePPI FPR (≤)	0.05		0.01		0.001		0.0001
ZEPPI Score (≥)	–	4	–	4	–	4	–	4
# PPIs	303,212	38,062	71,151	17,098	10,336	6,002	3,151	2,355
# Proteins	3,941	3,671	3,557	3,030	2,464	1,993	1,605	1,350
# PPIs in DBs	38,916	9,069	14,580	6,090	5,289	3,528	2,386	1,837
# Novel PPIs	264,296	28,993	56,571	11,008	5,047	2,474	765	518