TABLE 1.
Sizes of polymorphic SmaI and ApaI restriction fragmentsa
| Fragment sizeb (kb) | Presence of fragment in strainc:
|
||||||||
|---|---|---|---|---|---|---|---|---|---|
| MG1363d | NCDO712 | NCDO505 | NCDO763 | MMS36 | NCDO2031 | C2 | LM0230 | LM2301 | |
| SmaI fragments | |||||||||
| 610 | + (Sm1) | + | + | − | − | − | − | − | − |
| 580 | − | − | − | + | + | − | − | − | − |
| 550 | − | − | − | − | − | + | + | + | + |
| 325 | + (Sm2) | + | + | − | − | + | + | + | + |
| 290 | − | − | − | + | + | − | − | − | − |
| 220 | − | + | + | − | − | + | + | − | − |
| 180 | + (Sm5A) | − | − | + | + | − | − | + | + |
| 160 | − | − | − | + | + | − | − | − | − |
| 130 | + (Sm6) | + | + | − | − | + | + | + | − |
| 105 | + (Sm8) | + | + | + | + | + | + | − | + |
| 58 | − | − | − | − | − | − | − | + | + |
| 55* | − | + | + | − | − | + | + | − | − |
| 45 | − | − | − | − | − | − | + | − | − |
| 42 | + (Sm11A) | + | + | + | + | + | − | + | + |
| 36* | − | + | + | − | − | − | − | − | − |
| 30* | − | + | + | − | − | − | − | − | − |
| 24* | − | − | − | + | + | − | − | − | − |
| ApaI fragments | |||||||||
| 165 | − | + | + | − | − | + | + | − | − |
| 160 | + (Ap3) | − | − | + | + | − | − | + | + |
| 145 | + (Ap4) | + | + | − | − | − | − | − | − |
| 120 | − | − | − | + | + | − | − | − | + |
| 100 | − | − | − | − | − | + | + | + | + |
| 75 | + (Ap10C) | + | + | + | + | + | + | + | − |
| 69 | + (Ap11) | + | + | − | − | + | + | − | − |
| 67 | − | − | − | − | − | − | − | + | − |
| 65 | + (Ap12B) | + | + | − | − | + | + | + | + |
| 55* | − | + | + | + | + | + | + | − | − |
| 49 | + (Ap14A) | + | + | + | + | + | + | − | − |
| 29 | − | − | − | − | − | − | − | + | + |
| 19 | − | − | − | + | + | − | − | − | − |
| 16 | + (Ap26) | + | + | + | + | − | − | − | − |
| 13 | + (Ap27B) | + | + | + | + | + | + | − | − |
| 12 | + (Ap28) | + | + | + | + | + | + | − | − |
| 11* | − | + | + | − | − | + | + | − | − |
a
A detailed table containing the number and size of the ApaI and SmaI restriction fragments of each strain is available upon request to the authors.
b
Asterisks indicate fragments assigned to plasmid DNA (see text).
c
The mean genome size for a given strain was calculated assuming an error of the order of 5%: MG1363, 2.5 ± 0.1 Mb; NCDO712 and NCDO505, 2.6 ± 0.1 Mb; NCDO763 and MMS36, 2.6 ± 0.1 Mb; NCDO2031, 2.6 ± 0.1 Mb; C2, 2.6 ± 0.1 Mb; LM0230, 2.4 ± 0.1 M; LM2301, 2.4 ± 0.1 Mb.
d
Restriction fragments of strain MG1363 were labeled according to reference 35.